View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0885_low_8 (Length: 456)
Name: NF0885_low_8
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_8 |
 | |
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| [»] chr6 (5 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (6 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 27878022 - 27878392
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27878022 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
27878121 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
27878122 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
27878221 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27878222 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
27878321 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878322 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
27878392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 212 - 456
Target Start/End: Complemental strand, 30968287 - 30968043
Alignment:
| Q |
212 |
agaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacgaagagtgtagagccttctctttaag |
311 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30968287 |
agaagccatgagttgagaaaatagcgtattcagggtgttgatgtgattcgttacggatgtggattcacccattcgaagagtgtagagccttctctttaag |
30968188 |
T |
|
| Q |
312 |
aatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968187 |
aatattctgttgtggagtgatttgacctcgtacaattttattagaatatcccagatctcctttaatgtcttcttttcagcaatacttgacaataccgagt |
30968088 |
T |
|
| Q |
412 |
ctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968087 |
ccgccattgctaggtgcaaattggcaacggcattatcatccatct |
30968043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 87 - 435
Target Start/End: Original strand, 8480120 - 8480468
Alignment:
| Q |
87 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcac |
186 |
Q |
| |
|
||||||||||| ||||||| ||| | || || || ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |
|
|
| T |
8480120 |
acatcatcaaaatgaagagagtcaacaatattgttgtttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
8480219 |
T |
|
| Q |
187 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacg |
286 |
Q |
| |
|
| | |||||| ||||| ||||||| || | ||||| |||| |||||| ||||||| |||||| ||||||| ||| ||| || ||||| || || |
|
|
| T |
8480220 |
gtttattttcagctatcatgaaatctgatgttgtgagctgagcaaatagtgtattcatggtgtttatgtgatttgttgtcgatatgtattcattcattcg |
8480319 |
T |
|
| Q |
287 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttt |
386 |
Q |
| |
|
|||||||| || || | |||||||| ||||| |||| ||||| || |||| ||||||||| || | | |||| |||||||| |||| | ||| || |
|
|
| T |
8480320 |
gagagtgtaaagactccattttaagaaaattcttgtgtgaagtgacttcaccttgtacaatttaataataacatcctagatctcccttgcagactttttc |
8480419 |
T |
|
| Q |
387 |
tcagcaatacttgacaataccgagtctgccattgctaggtgcaaattgg |
435 |
Q |
| |
|
|| | ||||||||| |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
8480420 |
tctgtaatacttgaaaataccgagtctgcaattgctaagtgcaaattgg |
8480468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 86 - 178
Target Start/End: Complemental strand, 30968375 - 30968283
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaag |
178 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30968375 |
gacatcataaaagtgaagagtatcagatatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag |
30968283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 238 - 438
Target Start/End: Complemental strand, 8481247 - 8481047
Alignment:
| Q |
238 |
tattcagggtgttgatgtgatccgttacagatgtggattcacccaaacgaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgac |
337 |
Q |
| |
|
|||||| |||||| ||||||| |||| ||| |||||||| || || |||||||||||||| || || ||||| ||| | | || ||||| ||||| |
|
|
| T |
8481247 |
tattcatggtgtttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctccttttcaagaaaattattgtttgaagtgacttgac |
8481148 |
T |
|
| Q |
338 |
ctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggca |
437 |
Q |
| |
|
|||||||||||| || ||||||||| |||||||| |||| ||||| || | |||||| ||| | || | ||||||||||||||| ||| |||| |||| |
|
|
| T |
8481147 |
ctcgtacaatttaataagagtatcctagatctcccttgcagtcttattctatacaatacatgaaagtatcaagtctgccattgctaagtgaaaatcggca |
8481048 |
T |
|
| Q |
438 |
a |
438 |
Q |
| |
|
| |
|
|
| T |
8481047 |
a |
8481047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Complemental strand, 41719414 - 41719044
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41719414 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
41719315 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
41719314 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
41719215 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41719214 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
41719115 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41719114 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
41719044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Complemental strand, 34353017 - 34352647
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34353017 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
34352918 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
34352917 |
cgctcattctccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
34352818 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34352817 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccaaatctcctttgccgtcttctt |
34352718 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352717 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
34352647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 87 - 456
Target Start/End: Complemental strand, 23319295 - 23318926
Alignment:
| Q |
87 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcac |
186 |
Q |
| |
|
||||||||||| ||||||| ||||| || || || ||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||| |||| |
|
|
| T |
23319295 |
acatcatcaaaatgaagagagtcagcaatattgttgtttgtaatgttgatgatgagttgttcatatgaatgaggtaaactctgaagtagaagttttgcac |
23319196 |
T |
|
| Q |
187 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacg |
286 |
Q |
| |
|
| |||||||| ||||| ||| ||| || || ||||| |||| |||||| ||||| | ||| || ||||||| |||| ||| |||| ||| || | |
|
|
| T |
23319195 |
gttcattttcagctatcatgacatctgaggctgtgagctgagcaaatagtgtatttatggtatttatgtgatttgttattgatatggactcatacattca |
23319096 |
T |
|
| Q |
287 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttt |
386 |
Q |
| |
|
|||||||||| ||| || |||||||| ||||| ||| ||||||||||||||||||||||| || |||| ||| ||||||||||||| | ||| || |
|
|
| T |
23319095 |
gagagtgtagaacctcctttttaagaaaattcttgcgtgaagtgatttgacctcgtacaatttaataagagcatcttagatctcctttgcagactttttc |
23318996 |
T |
|
| Q |
387 |
tcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
|| |||||||||||||||||||||| || |||||||| ||| ||||||||||| | || |||||||||| |
|
|
| T |
23318995 |
tctgcaatacttgacaataccgagtttgtcattgctaagtgaaaattggcaacatcgttgtcatccatct |
23318926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 31502529 - 31502589
Alignment:
| Q |
106 |
tatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaact |
166 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31502529 |
tatcatctatattattatttgtaatgttgatgatgagttgatcatacgaatcttgtaaact |
31502589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 48701134 - 48701504
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48701134 |
gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
48701233 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
48701234 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
48701333 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48701334 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
48701433 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701434 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
48701504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Complemental strand, 42266907 - 42266537
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42266907 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
42266808 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
42266807 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
42266708 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42266707 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
42266608 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266607 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
42266537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 30949496 - 30949866
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
30949496 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagca |
30949595 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
30949596 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
30949695 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30949696 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttttt |
30949795 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30949796 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
30949866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 258
Target Start/End: Complemental strand, 1999894 - 1999723
Alignment:
| Q |
87 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcac |
186 |
Q |
| |
|
||||||||||| ||||||| ||||| || || | ||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |
|
|
| T |
1999894 |
acatcatcaaaatgaagagagtcagcaatattgtatattgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
1999795 |
T |
|
| Q |
187 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgat |
258 |
Q |
| |
|
| |||||||| |||||| ||||||| || || |||||||||| |||||| ||||||| ||| || ||||||| |
|
|
| T |
1999794 |
gttcattttcagctattgtgaaatctgaggctgtgagttgaggaaatagtgtattcatggtatttatgtgat |
1999723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 439
Target Start/End: Original strand, 21514352 - 21514705
Alignment:
| Q |
88 |
catcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacg |
187 |
Q |
| |
|
|||||||||| ||||| |||||| | | |||| ||| ||||||||| |||||||| ||||||| |||||| |||| | ||||||||||| | | | |
|
|
| T |
21514352 |
catcatcaaaatgaagggtatcaaccacattatcattgataatgttgacgatgagtttatcatacaaatctgataaaaactaaagtagaagtttaactct |
21514451 |
T |
|
| Q |
188 |
ctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacga |
287 |
Q |
| |
|
|||| |||||| |||| |||||| |||| || ||||| |||||| |||||| ||||| |||||||||| ||| | ||||||||| || ||| |
|
|
| T |
21514452 |
ctcactttccgttattctgaaatttgaagttgtaagttggaaaaataacgtatttagggtattgatgtgatatgttgttgtcttggattcactcattcga |
21514551 |
T |
|
| Q |
288 |
agagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctttt |
387 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||| ||| |||||||||||| |||||||| |||||| | | ||||| |||| |||||| |||| |
|
|
| T |
21514552 |
agagtgtagagccttatttttaagaatattcagttgtgaagtaatttgacctcgttcaattttactagagtgcctcgtatctcatttgttgtcttttttt |
21514651 |
T |
|
| Q |
388 |
--cagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaac |
439 |
Q |
| |
|
|| |||||||||||||| || || ||||||| ||||||||||| ||||| |
|
|
| T |
21514652 |
cccaataatacttgacaatattgaatccaccattgcaaggtgcaaatttgcaac |
21514705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 456
Target Start/End: Complemental strand, 1999695 - 1999548
Alignment:
| Q |
309 |
aagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccg |
408 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||| ||||||||||| | ||| || || | ||||||||||||||||| |
|
|
| T |
1999695 |
aagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccatatctcctttgcagactttttctctggaatacttgacaataccg |
1999596 |
T |
|
| Q |
409 |
agtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
| | ||||||||||| ||||||||||| ||| || || |||||||||| |
|
|
| T |
1999595 |
aatttgccattgctaagtgcaaattggtaacagcgttgtcatccatct |
1999548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 5822588 - 5822958
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5822588 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
5822687 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
5822688 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
5822787 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5822788 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
5822887 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822888 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
5822958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 2816576 - 2816946
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
2816576 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagca |
2816675 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
2816676 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc |
2816775 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2816776 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattaaagtatcccagatctcctttgctgtcttctt |
2816875 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816876 |
ttcttcaatacttgacaataccgagtccaccatatctaggtgcaaattggcaacggcattatcatccatct |
2816946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 87 - 456
Target Start/End: Complemental strand, 42585960 - 42585591
Alignment:
| Q |
87 |
acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcac |
186 |
Q |
| |
|
||||||||||| ||||||| ||| | || || ||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| |
|
|
| T |
42585960 |
acatcatcaaaatgaagagagtcaacaatattgttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac |
42585861 |
T |
|
| Q |
187 |
gctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacg |
286 |
Q |
| |
|
| |||||||| |||||| ||||||| || || ||||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| || || |
|
|
| T |
42585860 |
gttcattttcagctattgtgaaatctgaggctgtgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcg |
42585761 |
T |
|
| Q |
287 |
aagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttt |
386 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| |||| ||||| ||||||||||||||||| || |||| |||||||||||||||||| | ||| || |
|
|
| T |
42585760 |
gagagtgtagagcctcctttttaagaaaattcttgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctttgcagactttttc |
42585661 |
T |
|
| Q |
387 |
tcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
|| ||||||||||| |||||||| ||||||||||||| ||||||||||||||| | || |||||||||| |
|
|
| T |
42585660 |
tctgcaatacttgataataccgaatctgccattgctaagtgcaaattggcaacaacgttgtcatccatct |
42585591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 230 - 456
Target Start/End: Complemental strand, 25877693 - 25877467
Alignment:
| Q |
230 |
aaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacgaagagtgtagagccttctctttaagaatattctgttgtggagt |
329 |
Q |
| |
|
|||||| ||||||| |||||| ||||||| |||| ||| |||||||| || | |||||| |||||||| || |||||||| ||||| |||| ||| |
|
|
| T |
25877693 |
aaatagtgtattcatggtgtttatgtgatttgttattgatatggattcattcattcaaagagtatagagcctcctttttaagaaaattcttgtgtgaagt |
25877594 |
T |
|
| Q |
330 |
gatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtctgccattgctaggtgca |
429 |
Q |
| |
|
|| ||||||||||||||||| | |||| |||||||||||| ||| ||| || || ||||||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
25877593 |
gacttgacctcgtacaatttaaaaagagcgtcccagatctcccttgaaaactttttctctccaatacttgacaatatcgagtctgccattactaagtgca |
25877494 |
T |
|
| Q |
430 |
aattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||| |||| |||||||||| |
|
|
| T |
25877493 |
aattggcaataacattgtcatccatct |
25877467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 439
Target Start/End: Original strand, 47277124 - 47277453
Alignment:
| Q |
117 |
ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttca--gcacgctcattttccgctattttgaaatcaga |
214 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| || |||| |||| |||||||||||||| ||| ||||||||||||| || | ||| ||| |
|
|
| T |
47277124 |
ttattgttggtaatgttgatgatgaggtgatcatacaaagatggttaactcagaagtagaagttcaacacacactcattttccgcttttctaaaacgaga |
47277223 |
T |
|
| Q |
215 |
agccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacgaagagtgtagagccttctctttaagaat |
314 |
Q |
| |
|
|| ||||| ||||||||| || |||||| |||||| ||||||| ||| || |||||||||||| | || ||||||| | |||| ||||| ||| |
|
|
| T |
47277224 |
agttgtgagatgagaaaattgcatattcaaggtgtt-atgtgatatgtt--tgacgtggattcacccgttcaaaaagtgtagtgtcttccttttaataat |
47277320 |
T |
|
| Q |
315 |
attctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtct---tcttttcagcaatacttgacaatac----- |
406 |
Q |
| |
|
||| | ||||| | ||||| | |||||| ||||||||||||||||| || |||||||||| ||| | |||| ||| ||||||||||||||| |
|
|
| T |
47277321 |
attttattgtgaaatgattatatctcgtataattttattagagtatcacatatctcctttgttgtattaatcttctcataaatacttgacaatactgtgt |
47277420 |
T |
|
| Q |
407 |
cgagtctgccattgctaggtgcaaattggcaac |
439 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
47277421 |
tgagcctgccattgctaggtgcaaattggcaac |
47277453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 9443405 - 9443775
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9443405 |
gacatcattaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
9443504 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
9443505 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc |
9443604 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9443605 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
9443704 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443705 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggcattatcatccatct |
9443775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 120 - 456
Target Start/End: Original strand, 24597829 - 24598165
Alignment:
| Q |
120 |
ttatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagccg |
219 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |||||||| |||||| ||||||| || || | |
|
|
| T |
24597829 |
ttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctg |
24597928 |
T |
|
| Q |
220 |
tgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaacgaagagtgtagagccttctctttaagaatattct |
319 |
Q |
| |
|
|||| |||| |||||| ||||||| ||| || ||||||| |||| ||| |||||||| || || |||||||||||||| || |||||||| ||||| |
|
|
| T |
24597929 |
tgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagagtgtagagcctcctttttaagaaaattct |
24598028 |
T |
|
| Q |
320 |
gttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttcttttcagcaatacttgacaataccgagtctgccatt |
419 |
Q |
| |
|
|||| ||||| ||||||||||||||||| || |||| |||||||||||||||||| | ||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
24598029 |
tgtgtgaagtgacttgacctcgtacaatttaataagagcatcccagatctcctttgcagactttttctctgcaatacttgacaataccgaatctgccatt |
24598128 |
T |
|
| Q |
420 |
gctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
|||| ||||||||||||||| || || |||||||||| |
|
|
| T |
24598129 |
gctaagtgcaaattggcaacagcgttgtcatccatct |
24598165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 86 - 456
Target Start/End: Complemental strand, 826483 - 826113
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
826483 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca |
826384 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
826383 |
cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattaagggtgttgatgtgatctgttacggatgtggattcacccattc |
826284 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
826283 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagtgtatcccagatctcctttgctgtcttctt |
826184 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
826183 |
ttcagcaatacttgacaataccgagtccgccattgctaggtgcaaattggcaacggaattatcatccatct |
826113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 13843110 - 13843481
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||| || || ||| ||||||||||||||| || |
|
|
| T |
13843110 |
gacatcatcaaagtgaagagtgtcaactatattgttatttgtaatgttgatgatgagttgatcatacaaatttgatatactatgaagtagaagttcaaca |
13843209 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
|||||||||| |||||| |||||||||||| || |||||||||||||| ||||||| ||| || ||||||| |||| ||||||||||||| || | |
|
|
| T |
13843210 |
tgctcattttctgctattatgaaatcagaagttgtaagttgagaaaatagtgtattcaaggtcttaatgtgatatgttattgatgtggattcactcattc |
13843309 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatc-tcctttgctgtcttct |
384 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||| ||||| ||||||| || ||||| |
|
|
| T |
13843310 |
taagagtgtagagcctcccatttaagaatattatgttatgaagttatttgacctcgtacaattttattagagtgtcctagatcttcctttgttgccttct |
13843409 |
T |
|
| Q |
385 |
tttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| | |||||||| |||| |
|
|
| T |
13843410 |
tttcaacaatacttgacaatatcgagtctaccattgcaaggtgcaaattggcaacaacgttatcatctatct |
13843481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 86 - 456
Target Start/End: Original strand, 8137771 - 8138141
Alignment:
| Q |
86 |
gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagca |
185 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| || |
|
|
| T |
8137771 |
gacattatcaaagtgaagagtatcagctatgttattatttggaatgttgatgatgagttgatcatacaaatatggtaaactctgaagtagaagttccaca |
8137870 |
T |
|
| Q |
186 |
cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacagatgtggattcacccaaac |
285 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | || || |||||||| |||||||||||||||||||||||| |||| ||||||||||||||| | |
|
|
| T |
8137871 |
cgctcattttccgctattttgaaattagaagttgggattttagaaaataccgtattcagggtgttgatgtgatctgttatgaatgtggattcacccattc |
8137970 |
T |
|
| Q |
286 |
gaagagtgtagagccttctctttaagaatattctgttgtggagtgatttgacctcgtacaattttattagagtatcccagatctcctttgctgtcttctt |
385 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
8137971 |
gaagagtgtagagcctcctctttaagaatattctgttgcggagtgatttgacctcgtacaattttattagagtatccccgatctcgtttgttgtcttctt |
8138070 |
T |
|
| Q |
386 |
ttcagcaatacttgacaataccgagtctgccattgctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
8138071 |
ttcagcaatacttgacaatacccagtctgccattgctaggtgcaggttggcaacaacattatcttccatct |
8138141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 456
Target Start/End: Complemental strand, 25441478 - 25441395
Alignment:
| Q |
377 |
tgtcttcttttcagcaatacttgacaataccgagtctgccattg----ctaggtgcaaattggcaacggcattatcatccatct |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | ||||| | | |||||||||||| ||| ||||||||||||||| |
|
|
| T |
25441478 |
tgtcttcttttcagcaatacttgacaatactgagtccgtcattggcgtcgatgtgcaaattggcgacgacattatcatccatct |
25441395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 46452619 - 46452552
Alignment:
| Q |
127 |
taatgttgatgatgagttgatcatacgaatctggtaaactttgaagtagaagttcagcacgctcatttt |
195 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
46452619 |
taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt |
46452552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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