View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0885_low_9 (Length: 450)
Name: NF0885_low_9
Description: NF0885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0885_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 2677725 - 2678145
Alignment:
| Q |
1 |
tgttagattctggaaacttggtcttgatggatggaaagaaccatgattctaatagttacatatggcaaagctttgattatcctacagacacaatgttacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677725 |
tgttagattctggaaacttggtcttgatggatggaaagaaccatgattctaatagttacatatggcaaagctttgattatcctacagacacaatgttacc |
2677824 |
T |
|
| Q |
101 |
tggcatgaagttgggttgggataaggcctcaggtcttgatagatatttgacatcatggaagagtgctgatgatgatccttcttatggaagttttacctac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677825 |
tggcatgaagttgggttgggataaggcctcaggtcttgatagatatttgacatcatggaagagtgctgatgatgatccttcttatggaagttttacctac |
2677924 |
T |
|
| Q |
201 |
aactttgatcataaagaatttgctgagttagtgatttgccaaggaaagaacatcacatttagaagggggatttggaatggcgttcgttttaattccgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2677925 |
aactttgatcataaagaatttgctgagttagtgattcaccaaggaaagaacatcacgtttagaagtgggatttggaatggcgttcgttttaattccgatg |
2678024 |
T |
|
| Q |
301 |
attggacatcgtttataggagttacagccttcaagccacaactttcagtaaccaagaatgaggtagtgtattgggatgaacctggagatagattgtcaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2678025 |
attggacatcgtttataggagttacagccttcaagccacaactttcagtaaccaagaatgaggtagtgtattgggatgaacctggagatagattgtcaag |
2678124 |
T |
|
| Q |
401 |
gtttatgatgagggatgatgg |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2678125 |
gtttatgatgagggatgatgg |
2678145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 267 - 421
Target Start/End: Complemental strand, 3052613 - 3052462
Alignment:
| Q |
267 |
gggatttggaatggcgttcgttttaattccgatgattggacatcgtttataggagttacagccttcaagccacaactttcagtaaccaagaatgaggtag |
366 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||| |||| | ||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
3052613 |
gggatttggaatggcgtcgcttttaattccgatgattggacatcttttacaggaatg---gcccttaggccacaactttcagtaaccaagaatgaggtag |
3052517 |
T |
|
| Q |
367 |
tgtattgggatgaacctggagatagattgtcaaggtttatgatgagggatgatgg |
421 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3052516 |
tgaattgggatgaacctggagatagattgtcaaggtttatgattagggatgatgg |
3052462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 3052787 - 3052682
Alignment:
| Q |
1 |
tgttagattctggaaacttggtcttgatggatggaaaga--accatgattctaatagttacatatggcaaagct----ttgattatcctacagacacaat |
94 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||| | ||||||||| || || || ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3052787 |
tgttagattctggaaacttggtcttgaaggatggagagattaacatgattcttctaattgcacatggcaaagctttgattgattatccaacagacacaat |
3052688 |
T |
|
| Q |
95 |
gttacc |
100 |
Q |
| |
|
|||||| |
|
|
| T |
3052687 |
gttacc |
3052682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 951 times since January 2019
Visitors: 6707