View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0886_high_13 (Length: 299)
Name: NF0886_high_13
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 295
Target Start/End: Original strand, 37973154 - 37973412
Alignment:
| Q |
30 |
aacaaaggattcttaaagt-aaaaagcaagttagagaagcaacttgtttgccaaccaaatcatcatatcatatcgttatatcattagaaggctagaaggt |
128 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37973154 |
aacaaaggattcttaaaattaaaaagcaagttagagaagcaacttgtttgccaaccaaatcatcatatcatat--------cattagaaggctagaaggt |
37973245 |
T |
|
| Q |
129 |
tcaaatttctaagagaggattttggagttaaaaaatccttcacgtgtttaaattaaggggagcactgaaagtgtgattcaaataggagtgttgcacatgg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37973246 |
tcaaatttctaagagaggattttggagttaaaaaatccttcacgtgtttaaattaaggggagcactgaaagtgtgattcaaataggagtgttgcacatgg |
37973345 |
T |
|
| Q |
229 |
aaaaattgccatccctagccaacaactctatatacatgcatgtttttcatgttagtgtattcatctc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37973346 |
aaaaattgccatccctagccaacaactctatatacatgcatgtttttcatgttagtgtattcttctc |
37973412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 37952483 - 37952597
Alignment:
| Q |
121 |
tagaaggttcaaatttctaagagagga-ttttggagttaaaaaatccttcacgtgtttaaattaaggggagcactgaaag----tgtgattcaaatagga |
215 |
Q |
| |
|
|||||| ||||||||| | |||||| | ||||||| ||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
37952483 |
tagaagattcaaattttttagagagaacttttggacttaaaaaatccttcatgtgtttaaattaaggggagcgttgaaagtatatatgattcaaatagga |
37952582 |
T |
|
| Q |
216 |
gtgttgcacatggaa |
230 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
37952583 |
gtgttgtatatggaa |
37952597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 37951870 - 37951982
Alignment:
| Q |
115 |
gaaggctagaaggttcaaatttctaagagagg--attttggagttaaaaaatccttcacgtgtttaaattaaggggagcactgaaagtgtgattcaaata |
212 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| |||| ||||||| |||||||| |||||||| || ||||||||||||||||| | |
|
|
| T |
37951870 |
gaaggctaaaagattcaaatttctaagagagagtattttggagataaa---tccttcaggtgtttaagttaagggg-gcgttgaaagtgtgattcaaaca |
37951965 |
T |
|
| Q |
213 |
ggagtgttgcacatgga |
229 |
Q |
| |
|
|||||| || ||||||| |
|
|
| T |
37951966 |
ggagtgatgtacatgga |
37951982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 37951807 - 37951868
Alignment:
| Q |
30 |
aacaaaggattcttaaagtaaaaagcaagttagagaagcaacttgtttgccaaccaaatcat |
91 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
37951807 |
aacaaaggattcttaaagttgacagcaagtcagagaagcaacttgcttaccaaccaaatcat |
37951868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 37952422 - 37952483
Alignment:
| Q |
30 |
aacaaaggattcttaaagtaaaaagcaagttagagaagcaacttgtttgccaaccaaatcat |
91 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| || ||||||||||| | ||||||||||||| |
|
|
| T |
37952422 |
aacaaaggattcttgaagtagaaagcaagtgagggaagcaacttgcataccaaccaaatcat |
37952483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 983 times since January 2019
Visitors: 6719