View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0886_high_14 (Length: 291)

Name: NF0886_high_14
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0886_high_14
NF0886_high_14
[»] chr3 (23 HSPs)
chr3 (65-234)||(10376373-10376542)
chr3 (65-232)||(10364328-10364495)
chr3 (65-234)||(10579973-10580142)
chr3 (65-234)||(10434572-10434741)
chr3 (78-234)||(10195058-10195214)
chr3 (78-234)||(10088175-10088331)
chr3 (65-191)||(9838233-9838359)
chr3 (65-191)||(9849111-9849237)
chr3 (69-234)||(11768610-11768775)
chr3 (65-234)||(10076638-10076807)
chr3 (65-158)||(10505157-10505250)
chr3 (81-234)||(11131554-11131707)
chr3 (81-234)||(13289053-13289206)
chr3 (81-234)||(13160368-13160521)
chr3 (81-234)||(13332292-13332445)
chr3 (123-191)||(10084150-10084218)
chr3 (130-234)||(11149382-11149486)
chr3 (123-188)||(10191073-10191138)
chr3 (81-234)||(10888694-10888847)
chr3 (81-166)||(13170419-13170504)
chr3 (81-166)||(13343477-13343562)
chr3 (81-234)||(8860674-8860827)
chr3 (81-234)||(11160545-11160698)
[»] scaffold0083 (1 HSPs)
scaffold0083 (65-234)||(50333-50502)
[»] chr2 (2 HSPs)
chr2 (65-234)||(26906269-26906438)
chr2 (76-215)||(3438480-3438623)
[»] chr8 (1 HSPs)
chr8 (65-184)||(44958256-44958375)
[»] scaffold0002 (2 HSPs)
scaffold0002 (81-234)||(146467-146620)
scaffold0002 (81-166)||(136484-136569)
[»] chr5 (1 HSPs)
chr5 (68-160)||(19956992-19957085)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 10376542 - 10376373
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  10376542 ggctgcaactatgataggaggtgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacacc 10376443  T
Q  165 aaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  10376442 aaactcaatgtctcactcttgaggcagttaaaaacaacactgctcactcttcaagttgtgctggatgatg 10376373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 10364495 - 10364328
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  10364495 ggctgcaactatgataggaggagcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacacc 10364396  T
Q  165 aaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatga 232  Q
    |||||||||| |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  10364395 aaactcaatgactcactcttgaggcagttacaaacaacactgctcactcttcaagttgtgctggatga 10364328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 10579973 - 10580142
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||     
T  10579973 ggctgcaactatgattggaggtgctttcctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaaacact 10580072  T
Q  165 aaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10580073 aagctcaatgtctcactcttgaggcagcttaaaacaacactgctcactcttcaagttgtgctggatgatg 10580142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 10434741 - 10434572
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||  ||||||| |||||||||||||||||||    
T  10434741 ggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttcaaaagagtttcgtgattacatcaaaaacacc 10434642  T
Q  165 aaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    || ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  10434641 aagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 10434572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 10195058 - 10195214
Alignment:
Q  78 ataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtct 177  Q
    |||||| | |||||||||||||||||| |||||||||| ||||| ||||| |||||||| ||||||| |||||||||||||||||||||  | |||||||    
T  10195058 ataggaagtgcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtct 10195157  T
Q  178 cactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10195158 cactcttgaggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatg 10195214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 10088175 - 10088331
Alignment:
Q  78 ataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtct 177  Q
    |||||| | |||||||||||||||||| |||||||||| ||||| ||||| |||||||| ||||||| |||||||||||||||||||||  | |||||||    
T  10088175 ataggaagtgcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtct 10088274  T
Q  178 cactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10088275 cactctcgaggcagctgaaaacaacactgctcactcttcaagttgtgctggatgatg 10088331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 9838233 - 9838359
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||     
T  9838233 ggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgattacatcaaaaacact 9838332  T
Q  165 aaactcaatgtctcactcttgaggcag 191  Q
    || ||||||||||||||||||||||||    
T  9838333 aagctcaatgtctcactcttgaggcag 9838359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 9849111 - 9849237
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||     
T  9849111 ggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgattacatcaaaaacact 9849210  T
Q  165 aaactcaatgtctcactcttgaggcag 191  Q
    || ||||||||||||||||||||||||    
T  9849211 aagctcaatgtctcactcttgaggcag 9849237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 11768610 - 11768775
Alignment:
Q  69 gcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaac 168  Q
    ||||| ||||||||||| ||||||||||| |||||| | || |||||  |||| ||||| |||||||| ||||||||||||||||||||||||||||| |    
T  11768610 gcaactatgataggaggcgcttttctctcggcaactatgcaaaccttgtttgagaaacttgcttcaacagagtttcttgattacatcaaaaacaccaagc 11768709  T
Q  169 tcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    | ||||||||||||||||||||  | |||||||| |||||||| ||||| | ||| ||||||||||    
T  11768710 tgaatgtctcactcttgaggcaattaaaaacaaccctgctcacacttcaggctgtactggatgatg 11768775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 10076638 - 10076807
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| ||||||||||| |||||||||  |||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||     
T  10076638 ggctgcaactatgataggaggtgcttttctccatgcaactgttcagaccttagttgagaaacttacttcaactgagtttcttgattacatcaaaaacaca 10076737  T
Q  165 aaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    || || ||||| |||||||| || ||| |  |||||||  |||||| |||||| | ||| || |||||||    
T  10076738 aatctgaatgtatcactcttcagacagttacaaacaaccatgctcaatcttcaggctgtactagatgatg 10076807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 10505157 - 10505250
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaa 158  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  10505157 ggctgcaactatgataggaggaacttttctctctgcaactgttcagaccttagttgacaaacttgcttcaacagagtttcgtgattacatcaaa 10505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 11131707 - 11131554
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    ||||| || |||||||||||  |||| || ||| |  ||||||||||  ||||||||||||||| ||||| |||||| ||||  || || ||||||||||    
T  11131707 ggaggtgcatttctctctgcttctgtccaaaccatgcttgacaaactaacttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcac 11131608  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    |||||| |||| |  |||||||||||||   |||||||| ||||||||||||||    
T  11131607 tcttgaagcagttacaaacaacactgctggttcttcaagctgtgctggatgatg 11131554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 13289053 - 13289206
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||   ||||||  ||||||||||| ||||| ||| || |||  |||||    
T  13289053 ggaggagcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaacaagctgaattcctcac 13289152  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    |||||    || |  |||||||||| ||| ||||||| || |||||||||||||    
T  13289153 tcttggcagagttggaaacaacactactcgctcttcaggtggtgctggatgatg 13289206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 13160368 - 13160521
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    ||||| |||||||||||||| ||||||||||| |||||||  ||||| ||||||   ||||||  ||||||||||| ||||||||| || |||  |||||    
T  13160368 ggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcac 13160467  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    | |||    || |  |||||||||||||| ||||||| || |||||||||||||    
T  13160468 tgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatg 13160521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 13332292 - 13332445
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||||   ||||||  ||||||||||| ||||||||| || |||  |||||    
T  13332292 ggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcac 13332391  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    | |||    || |  |||||||||||||| ||||||| |  |||||||||||||    
T  13332392 tgttggcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatg 13332445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 10084150 - 10084218
Alignment:
Q  123 aaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcactcttgaggcag 191  Q
    ||||| |||||||| || |||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  10084150 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgaggcag 10084218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 11149486 - 11149382
Alignment:
Q  130 cttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctgga 229  Q
    ||||||||||||||| ||||| |||||| ||||  || || |||||||||||||||| |||| |  |||||||||||||   |||||||| |||||||||    
T  11149486 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga 11149387  T
Q  230 tgatg 234  Q
    |||||    
T  11149386 tgatg 11149382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 10191073 - 10191138
Alignment:
Q  123 aaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcactcttgagg 188  Q
    ||||| |||||||| || |||||||||||||||||||||||||| |  ||||||||||||||||||    
T  10191073 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgagg 10191138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 10888694 - 10888847
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    ||||| || |||||||||||  |||| || ||| |  ||||| ||||  ||||||||||||||| ||||| |||||| ||||  || || ||||||||||    
T  10888694 ggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcac 10888793  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    |||||| |||| |  ||||||| |||||   |||||||| ||||||||||||||    
T  10888794 tcttgaagcagttacaaacaacgctgctggttcttcaagctgtgctggatgatg 10888847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 13170419 - 13170504
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaa 166  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||||   ||||||  ||||||||||| |||||||||    
T  13170419 ggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaccaa 13170504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 13343477 - 13343562
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaa 166  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||||   ||||||  ||||||||| | |||||||||    
T  13343477 ggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacataagaaacaccaa 13343562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 8860674 - 8860827
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    ||||| || |||||||||||  |||| || ||| |  ||||| ||||  ||||||| ||||||| ||||| |||||| ||||  || || || |||||||    
T  8860674 ggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaaccgagtttcgtgatttcatcaacaacagaaagctgaacgtctcac 8860773  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    |||||| |||| |  || |||| |||||   |||||||| ||||||||||||||    
T  8860774 tcttgaagcagttacaagcaacgctgctggttcttcaagctgtgctggatgatg 8860827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 11160698 - 11160545
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    ||||| || ||||| |||||  ||||||| ||| || ||||||||||  ||||||| ||||||| ||||| |||||| || |  ||  | ||||||||||    
T  11160698 ggaggtgcatttctatctgcttctgttcaaaccatacttgacaaactatcttcaaccgagtttcgtgatttcatcaacaataagaagttgaatgtctcac 11160599  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    |||||| |||| |  |||||||  ||||   ||| |||| ||||||||||||||    
T  11160598 tcttgaagcagttacaaacaacgttgctggttctacaagctgtgctggatgatg 11160545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 50502 - 50333
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||     
T  50502 ggctgcagctatgattggaggagcttttctcactgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacact 50403  T
Q  165 aaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  50402 aagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatgatg 50333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 26906269 - 26906438
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||| | |||||||||| ||||||||||||||||| ||||||||| |||||||| ||||| | ||||||  ||||||||||||||||||||||||||    
T  26906269 ggctgcagctatgataggagaagcttttctctctgcaattgttcagactttagttgagaaacttgtttcaacacagtttcttgattacatcaaaaacacc 26906368  T
Q  165 aaactcaatgtctcactcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  26906369 aagctcaatgtctcactcttgaggcagctaaaaacaacactgctcactctgcaggttgtgctggatgatg 26906438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 3438623 - 3438480
Alignment:
Q  76 tgataggaggagcttttctctctgcaactgttcagacctta----gttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactca 171  Q
    ||||| ||||||||||||||| ||||| | |||||||||||    ||||| ||||| |||||| | || |||||||||||||||||||| |||||  | |    
T  3438623 tgataagaggagcttttctctatgcaatttttcagaccttaattagttgagaaacttgcttcatcggattttcttgattacatcaaaaataccaagttaa 3438524  T
Q  172 atgtctcactcttgaggcagctcaaaacaacactgctcactctt 215  Q
    || ||||||| ||||||| | || | ||||||||||||||||||    
T  3438523 atatctcacttttgaggccgttcgatacaacactgctcactctt 3438480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 44958375 - 44958256
Alignment:
Q  65 ggctgcaacaatgataggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacacc 164  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  44958375 ggctgcaactatgataggaggagcttttctatctgcaactgttcaaaccttagttgagaaacttgcttcaacagagtttcttgattacatcaaaaacacc 44958276  T
Q  165 aaactcaatgtctcactctt 184  Q
    ||  ||||||||||||||||    
T  44958275 aagatcaatgtctcactctt 44958256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 146620 - 146467
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaaactcaatgtctcac 180  Q
    ||||| |||||||||||||| ||||||||||| |||||||  ||||| ||||||   ||||||  ||||||||||| ||||||||| || |||  |||||    
T  146620 ggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatcagaaacaccaagctgaattcctcac 146521  T
Q  181 tcttgaggcagctcaaaacaacactgctcactcttcaagttgtgctggatgatg 234  Q
    | |||    || |  |||||||||||||| ||||||| || |||||||||||||    
T  146520 tgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatgatg 146467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 136569 - 136484
Alignment:
Q  81 ggaggagcttttctctctgcaactgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaacaccaa 166  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||||   ||||||  ||||||||||| |||||||||    
T  136569 ggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatcagaaacaccaa 136484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 19956992 - 19957085
Alignment:
Q  68 tgcaacaatgataggaggagcttttctctctgcaa-ctgttcagaccttagttgacaaactcgcttcaactgagtttcttgattacatcaaaaa 160  Q
    |||||| ||||||||||||||||||||||| |||| || |||| ||||||||||| ||||| ||||| || || ||| || ||||||| |||||    
T  19956992 tgcaactatgataggaggagcttttctctcagcaacctattcaaaccttagttgagaaacttgcttccacggaatttttttattacataaaaaa 19957085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 993 times since January 2019
Visitors: 6719