View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0886_high_17 (Length: 270)

Name: NF0886_high_17
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0886_high_17
NF0886_high_17
[»] chr4 (9 HSPs)
chr4 (20-270)||(31244923-31245173)
chr4 (22-150)||(31019782-31019910)
chr4 (22-150)||(31159231-31159359)
chr4 (22-139)||(31489647-31489764)
chr4 (22-150)||(31029663-31029791)
chr4 (20-122)||(31496913-31497015)
chr4 (20-150)||(31476932-31477062)
chr4 (20-150)||(31502054-31502184)
chr4 (78-139)||(31150386-31150447)
[»] chr6 (11 HSPs)
chr6 (20-270)||(13608974-13609224)
chr6 (20-150)||(31560767-31560897)
chr6 (78-150)||(33642560-33642632)
chr6 (80-150)||(9168826-9168896)
chr6 (80-150)||(33390124-33390194)
chr6 (78-146)||(33059613-33059681)
chr6 (78-122)||(33273842-33273886)
chr6 (78-117)||(33402664-33402703)
chr6 (78-117)||(33412003-33412042)
chr6 (79-139)||(31567097-31567157)
chr6 (78-122)||(33306536-33306580)
[»] chr5 (1 HSPs)
chr5 (45-150)||(17599341-17599446)
[»] chr7 (3 HSPs)
chr7 (26-102)||(25446359-25446435)
chr7 (45-87)||(14724386-14724428)
chr7 (109-150)||(14724345-14724386)
[»] scaffold1749 (1 HSPs)
scaffold1749 (78-139)||(49-110)
[»] scaffold0428 (1 HSPs)
scaffold0428 (78-139)||(8810-8871)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 31245173 - 31244923
Alignment:
Q  20 acatcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatcc 119  Q
    ||||| |||||||| |||||| || |||||||||||||||||||| ||||||||||  |||||||||| |||||||||||||| ||||||||||||||||    
T  31245173 acatcctcaataaagcagcaagcatcaaattgattagagattctatcatacaaagcagtagcaagagtagtcttccctattccacccattccacaaatcc 31245074  T
Q  120 ctacaactcgaacatcatcatctgagtccaacctcagaagcttttctacttctcccattcttgagcgcatcccaactatatcgccgggtaaagttgaaga 219  Q
    |||| |||||||||||||||||||||||||   ||| ||||||||||| |||| | | || |||| |||||||||||||||||   ||||||||||||||    
T  31245073 ctaccactcgaacatcatcatctgagtccataatcaaaagcttttctaattcttcgactcgtgagtgcatcccaactatatcgttaggtaaagttgaaga 31244974  T
Q  220 tttgtgactcaataagcatgttacatcttcaataatttttccaatctctgc 270  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  31244973 tttgtgactcaataagcatgttacctctttaataatttttccaatctctgc 31244923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 31019782 - 31019910
Alignment:
Q  22 atcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatccct 121  Q
    ||||||||||||||| |   || ||||||||| |||||||  |||||| |||||  |||| |||||||||||||||||||| ||||| |||||||| |||    
T  31019782 atcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattcct 31019881  T
Q  122 acaactcgaacatcatcatctgagtccaa 150  Q
    ||||| |||||||||||| | ||||||||    
T  31019882 acaacccgaacatcatcaaccgagtccaa 31019910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 31159231 - 31159359
Alignment:
Q  22 atcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatccct 121  Q
    ||||||||||||||| |   || ||||| ||| ||||||||||||| | |||||  ||| ||||||||||||||||||||| ||||| |||||||| |||    
T  31159231 atcatcaataaaacaacgtacatcaaatcgatgagagattctaccacataaagcagtagtaagagttgtcttccctattccacccatcccacaaattcct 31159330  T
Q  122 acaactcgaacatcatcatctgagtccaa 150  Q
    ||||| |||||||||||| | ||||||||    
T  31159331 acaacccgaacatcatcaacggagtccaa 31159359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 31489764 - 31489647
Alignment:
Q  22 atcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatccct 121  Q
    ||||||||||||||| |   || ||||||||| |||||||  |||||| |||||  |||| |||||||||||||||||||| ||||| |||||||| |||    
T  31489764 atcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcccacaaattcct 31489665  T
Q  122 acaactcgaacatcatca 139  Q
    ||||| ||||||||||||    
T  31489664 acaacccgaacatcatca 31489647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 31029663 - 31029791
Alignment:
Q  22 atcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatccct 121  Q
    ||||||||||||||| |   || ||||||||| |||||||  |||||| |||||  |||  |||||||||||||||||||| ||||| |||||||| |||    
T  31029663 atcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcccacaaattcct 31029762  T
Q  122 acaactcgaacatcatcatctgagtccaa 150  Q
    ||||| |||||||||||| | ||||||||    
T  31029763 acaacccgaacatcatcaaccgagtccaa 31029791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 31497015 - 31496913
Alignment:
Q  20 acatcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatcc 119  Q
    ||||||||||||||||| ||  || ||||||||||||||||| || ||||||||||  ||||||| || |||||||||||||| ||||| |||||||| |    
T  31497015 acatcatcaataaaacatcatgcatcaaattgattagagattttagcatacaaagcagtagcaagggtagtcttccctattcctcccatcccacaaattc 31496916  T
Q  120 cta 122  Q
    |||    
T  31496915 cta 31496913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 31477062 - 31476932
Alignment:
Q  20 acatcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatcc 119  Q
    ||||||||||||||||||||  || ||||||||| ||| |||||| |||| | | |  |  |||| ||||||||||||||||| ||||| |||||||| |    
T  31477062 acatcatcaataaaacagcatgcaccaaattgatgagaaattctatcatatagaaccatgccaagggttgtcttccctattccacccatcccacaaattc 31476963  T
Q  120 ctacaactcgaacatcatcatctgagtccaa 150  Q
    |||||||  ||||||||||| | ||||||||    
T  31476962 ctacaacatgaacatcatcaacagagtccaa 31476932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 31502184 - 31502054
Alignment:
Q  20 acatcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatcc 119  Q
    |||||||| |||||||| ||  || ||||||||| ||| |||||| |||| | | |  || |||| ||||||||||||||||| ||||| ||||| || |    
T  31502184 acatcatcgataaaacaacatgcaccaaattgatgagaaattctatcatatagaaccctaccaagggttgtcttccctattccacccatcccacagattc 31502085  T
Q  120 ctacaactcgaacatcatcatctgagtccaa 150  Q
    ||||| || ||||||||||| | ||||||||    
T  31502084 ctacagcttgaacatcatcaacagagtccaa 31502054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 31150386 - 31150447
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatca 139  Q
    ||||||| ||||||||||||| ||| ||||| |||||||| |||||||| || |||||||||    
T  31150386 tagcaagggttgtcttccctactccacccatcccacaaattcctacaacacggacatcatca 31150447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 13609224 - 13608974
Alignment:
Q  20 acatcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatcc 119  Q
    |||||||||||||| || || | |||||||||||| |||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13609224 acatcatcaataaagcaacatctagcaaattgattggagattctagggcacaaagctttagcaagagttgtctttcctattccgcccattccacaaatcc 13609125  T
Q  120 ctacaactcgaacatcatcatctgagtccaacctcagaagcttttctacttctcccattcttgagcgcatcccaactatatcgccgggtaaagttgaaga 219  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||| |||| ||| || |||| ||||||||||||||| ||| |||||||||||||     
T  13609124 ctacaactcgaacatcatcatctgagtccaaattcagaaggttttctaattcttccactcgtgagtgcatcccaactatattgccaggtaaagttgaagt 13609025  T
Q  220 tttgtgactcaataagcatgttacatcttcaataatttttccaatctctgc 270  Q
    |||||  | ||||||||||||||  | || |||||||||||||||||||||    
T  13609024 tttgtttcccaataagcatgttaactttttaataatttttccaatctctgc 13608974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 31560897 - 31560767
Alignment:
Q  20 acatcatcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatcc 119  Q
    |||||||||||||||||| |  ||  |||| ||| ||| |||   ||||||||||   ||||||| | ||||||||||||||| |||||||||||||| |    
T  31560897 acatcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcctcccattccacaaattc 31560798  T
Q  120 ctacaactcgaacatcatcatctgagtccaa 150  Q
    ||| ||| |||||| ||||||| ||||||||    
T  31560797 ctataacacgaacaccatcatccgagtccaa 31560767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 33642632 - 33642560
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaa 150  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| | | |||||| ||||| ||||||||||    
T  33642632 tagcaagggttgtcttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagtccaa 33642560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 9168826 - 9168896
Alignment:
Q  80 gcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaa 150  Q
    ||||||||||||||||||||||| |||||||||||||| |||| | | |||||| |||||  |||||||||    
T  9168826 gcaagagttgtcttccctattcctcccattccacaaattcctatagcacgaacaccatcaattgagtccaa 9168896  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 33390124 - 33390194
Alignment:
Q  80 gcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaa 150  Q
    ||||| ||||||||||||||||| |||||||||||||| |||| | |  ||||| ||||| ||||||||||    
T  33390124 gcaagggttgtcttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaa 33390194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 33059613 - 33059681
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatcatctgagt 146  Q
    ||||||| ||||| ||||||||||| |||||||||||||| |||| | | |||||| ||||| ||||||    
T  33059613 tagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagt 33059681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 33273842 - 33273886
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaatcccta 122  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||    
T  33273842 tagcaagggttgtcttccctattcctcccattccacaaattccta 33273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 33402664 - 33402703
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaat 117  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  33402664 tagcaagggttgtcttccctattcctcccattccacaaat 33402703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 33412003 - 33412042
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaat 117  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  33412003 tagcaagggttgtctttcctattccgcccattccacaaat 33412042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 31567157 - 31567097
Alignment:
Q  79 agcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatca 139  Q
    |||||| | ||||||||||||||| |||||||||||||| |||| | | |||||| |||||    
T  31567157 agcaagggctgtcttccctattccccccattccacaaattcctatagcacgaacaccatca 31567097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 33306536 - 33306580
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaatcccta 122  Q
    ||||||| ||||||||||||||||| ||||||||| |||| ||||    
T  33306536 tagcaagggttgtcttccctattcctcccattccagaaattccta 33306580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 17599341 - 17599446
Alignment:
Q  45 caaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatcatctga 144  Q
    ||||||||||| |||||||| |||||||||| ||| ||||||| | |||||||||||  | ||||||||||||||||||| ||||||||||||  |||||    
T  17599341 caaattgattacagattctagcatacaaagcattaacaagagtagccttccctattcaactcattccacaaatccctacagctcgaacatcattgtctga 17599440  T
Q  145 gtccaa 150  Q
    ||||||    
T  17599441 gtccaa 17599446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 25446435 - 25446359
Alignment:
Q  26 tcaataaaacagcaaccagcaaattgattagagattctaccatacaaagctttagcaagagttgtcttccctattcc 102  Q
    ||||||||||| ||| || |||||||||  ||||||||  |||||||| |||||||||||| |||||| ||||||||    
T  25446435 tcaataaaacaacaagcatcaaattgatatgagattctgtcatacaaaactttagcaagagctgtctttcctattcc 25446359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 14724428 - 14724386
Alignment:
Q  45 caaattgattagagattctaccatacaaagctttagcaagagt 87  Q
    |||||||||||||||||||| |||||||||| ||| |||||||    
T  14724428 caaattgattagagattctagcatacaaagcattaacaagagt 14724386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 14724386 - 14724345
Alignment:
Q  109 tccacaaatccctacaactcgaacatcatcatctgagtccaa 150  Q
    |||||||||||||||| ||||||||||||  |||||||||||    
T  14724386 tccacaaatccctacagctcgaacatcattgtctgagtccaa 14724345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 49 - 110
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatca 139  Q
    ||||||| ||||||||||||||||| ||||| || ||||| |||| ||| |||||| |||||    
T  49 tagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaacaccatca 110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 8810 - 8871
Alignment:
Q  78 tagcaagagttgtcttccctattccgcccattccacaaatccctacaactcgaacatcatca 139  Q
    ||||||| ||||||||||||||||| ||||| || ||||| |||| ||| |||||| |||||    
T  8810 tagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaacaccatca 8871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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