View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_high_2 (Length: 464)
Name: NF0886_high_2
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 22 - 456
Target Start/End: Complemental strand, 24067770 - 24067336
Alignment:
| Q |
22 |
catcatcaagaatttgtagcattaagttgaaaacatctgaatgtgctttttcaatctcatcaaataaaacaactgcatgtgactttttccgaatagcttc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
24067770 |
catcatcaagaatttgtagcattaagttgaaaacatctgaatgtgctttttcaatctcatcaaacaaaacaactgcatgtgaatttttccgaatagcttc |
24067671 |
T |
|
| Q |
122 |
ggttaattgaccgccatcatcaaaaccgatatagccaggaggtgctccaattaaccgagctacattgtatctatccatgtactcactcatatctaatctt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24067670 |
ggttaattgaccgccatcatcaaaaccgatatagccaggaggtgctccaattaacctagctacattgtatctatccatgtactcactcatatctaatctt |
24067571 |
T |
|
| Q |
222 |
atcaatgaatcttttgaaccaaaatagtttgtagctaatgcattggctaattcagtttttcctacgcctgagggaccggtgaacatgaaacttgcaatag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24067570 |
atcaatgaatcttttgaaccaaaatagtttgtagctaatgcattggctaattcagtttttcctacgcctgagggaccggtgaacatgaaacttgcaatag |
24067471 |
T |
|
| Q |
322 |
gccttctgcagtttcttagaccgactctagcgcggcgaatagctcggcagattgtgctgattgcttcgttttgaccgatgacgtgtttgtgaagcatgtc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24067470 |
gccttctgcagtttcttagaccgactctagcgcggcgaatagctcggcagattgtgctgattgcttcgttttgaccgatgacgtgtttgtgaagcatgtc |
24067371 |
T |
|
| Q |
422 |
ttctaagttgaggagattttcgccttcttcctttg |
456 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
24067370 |
ttctaagttgaggagattttcgccttcttcctttg |
24067336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 3514621 - 3514698
Alignment:
| Q |
22 |
catcatcaagaatttgtagcattaagttgaaaacatctgaatgtgctttttcaatctcatcaaataaaacaactgcat |
99 |
Q |
| |
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||||||| | |||||| || | || |||||| ||||| |||||||| || ||||||||||||||||||| ||| |||| |
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| T |
3514621 |
catcatctaaaatttgaaggaatacgttgaagacatccgaatgtgccttctcaatctcatcaaataaaataacagcat |
3514698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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