View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0886_high_26 (Length: 250)
Name: NF0886_high_26
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_26 |
 | |
|
| [»] scaffold0192 (1 HSPs) |
| |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: scaffold0192 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 2599 - 2838
Alignment:
| Q |
11 |
cagagaggtaagttcagcggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggta |
110 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2599 |
cagagatgtcagttcagcggggggtgcgaggtgcatgtccctgtgtcgttgatacttgtcacacaggttgacatagtttttcgcatcttttagcatggta |
2698 |
T |
|
| Q |
111 |
ggccaaaagtatcatgctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttggg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2699 |
ggccaaaagtatcatgctcgtaggacctttttagcaagagctttggcacgaagatgttgtctacatatgccgtagtggatctcggcaaggacttcttggg |
2798 |
T |
|
| Q |
211 |
tctctttaggtcccatacacttaaagtgaatgagcaggcc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2799 |
tctctttaggtcccatacacttaaagtgaatgagcaggcc |
2838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 16919390 - 16919610
Alignment:
| Q |
12 |
agagaggtaagttcagcggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtag |
111 |
Q |
| |
|
||||| || ||||| || || |||||||||| ||||| | ||| ||||||| |||||||||||||||||||| | ||| |||| ||| | |||||| | |
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|
| T |
16919390 |
agagatgtcagttcggcaggaggtgcgaggttcatgtctccgtgtcgttgacctttgtcacacaggttgacataatctttggcatatttcaacatggtgg |
16919489 |
T |
|
| Q |
112 |
gccaaaagtatcatgctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggt |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| | ||| | ||||||||| ||||||||||| |
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|
| T |
16919490 |
gccaaaagtatcctgctcgtaggacctttttggcgagagctttcgcaccaagatgttgtctgcatatgccattgtgtacgtcggcaagtacttcttgggt |
16919589 |
T |
|
| Q |
212 |
ctctttaggtcccatacactt |
232 |
Q |
| |
|
||| |||||||||| |||||| |
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|
| T |
16919590 |
ctcgttaggtcccaaacactt |
16919610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 247684 - 247893
Alignment:
| Q |
23 |
ttcagcggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtat |
122 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| || | ||| |||||||| |||| || ||| || |||||||| | ||||||||||||||||||| |
|
|
| T |
247684 |
ttcagcggggggtgcgaggtgcatgtccccgtgtcgctaacatttgtcacaatggtttacgtagacttaggcatctttcaacatggtaggccaaaagtat |
247783 |
T |
|
| Q |
123 |
catgctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtc |
222 |
Q |
| |
|
| |||||||||||||||||| || |||||||| |||||||||||||||| || |||||| |||| ||| || ||||||||||||||||| ||||||| |
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|
| T |
247784 |
cctgctcgtaggacctttttcgcgagagctttagcaccaagatgttgtccgcagatgccgccatggacgtcagcgaggacttcttgggtctcgttaggtc |
247883 |
T |
|
| Q |
223 |
ccatacactt |
232 |
Q |
| |
|
||| |||||| |
|
|
| T |
247884 |
ccaaacactt |
247893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 22456836 - 22456647
Alignment:
| Q |
33 |
ggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtatcatgctcgta |
132 |
Q |
| |
|
||||||| ||| ||||||| || |||||||| ||||||||||||||||| || | || || |||||||||||||| |||||||| |||| ||| |||| |
|
|
| T |
22456836 |
ggtgcgatgtgcatgtccccatgtcgttgacatttgtcacacaggttgacgtaatccttggcgtcttttagcatggtgggccaaaattatcctgcacgta |
22456737 |
T |
|
| Q |
133 |
ggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtc |
222 |
Q |
| |
|
|||||||||| || ||| |||| |||||||||||||||| |||||||| | ||| || |||| |||||||||||| ||||| ||||||| |
|
|
| T |
22456736 |
ggacctttttggcgagaacttttgcaccaagatgttgtccgcatatgccatcgtgtatttcgggaaggacttcttgagtctcgttaggtc |
22456647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 42788281 - 42788490
Alignment:
| Q |
23 |
ttcagcggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtat |
122 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| ||| || || || |||||||| ||||| || |||| || |||||||| ||||| |||||||| |||||| |
|
|
| T |
42788281 |
ttcagcagggggtgcaaggtgcatgtccccgtgtcgctggcatttgtcacataggttcacgtagtcttgggcatctttcagcattgtaggccagaagtat |
42788380 |
T |
|
| Q |
123 |
catgctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtc |
222 |
Q |
| |
|
| || || | ||||||||| || |||||||| | |||||||| |||| || ||||||| ||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
42788381 |
cccgcccgcatgacctttttcgcgagagcttttgttccaagatgctgtccgcagatgccgtcgtggacgtcagcaaggacttcttgggtctcgttaggtc |
42788480 |
T |
|
| Q |
223 |
ccatacactt |
232 |
Q |
| |
|
||| |||||| |
|
|
| T |
42788481 |
ccagacactt |
42788490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 23468754 - 23468956
Alignment:
| Q |
30 |
gggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtatcatgctc |
129 |
Q |
| |
|
|||||||| ||||| | ||||| ||| || || || |||||||| ||||| || |||| || || || || | |||||||| |||| |||||| |||| |
|
|
| T |
23468754 |
gggggtgctaggtgcacgtccccgtgtcgctggcaattgtcacaaaggttcacgtagtcttgggcgtccttcaacatggtagaccaatagtatccggctc |
23468853 |
T |
|
| Q |
130 |
gtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtcccataca |
229 |
Q |
| |
|
|||||| ||||||||| |||||| | || | ||| |||| || || || |||| ||| | |||||| ||||||||||||||||| ||| |||| | ||| |
|
|
| T |
23468854 |
gtaggatctttttagcgagagctcttgcgcaaagttgttttccgcagataccgtcgtgaacgtcggcgaggacttcttgggtctcgttacgtcctaaaca |
23468953 |
T |
|
| Q |
230 |
ctt |
232 |
Q |
| |
|
||| |
|
|
| T |
23468954 |
ctt |
23468956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 15239204 - 15239408
Alignment:
| Q |
28 |
cggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtatcatgc |
127 |
Q |
| |
|
|||||||||||||||| ||||||| ||| || || || ||||| || ||||| ||||||| || ||||| || | ||| ||||||||| |||||| ||| |
|
|
| T |
15239204 |
cggggggtgcgaggtgcatgtccccgtgtcgctggcatttgtcgcaaaggtttacatagtcttcggcatccttcaacatagtaggccaatagtatcctgc |
15239303 |
T |
|
| Q |
128 |
tcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtcccata |
227 |
Q |
| |
|
||||||||||||| | || |||| ||| || |||||||||||| || ||||||| |||| ||| || ||||||||||||||||| |||||||||| | |
|
|
| T |
15239304 |
tcgtaggacctttcttgcgagagattttacatcaagatgttgtccgcagatgccgtcatggacgtcagcgaggacttcttgggtctcgttaggtcccaga |
15239403 |
T |
|
| Q |
228 |
cactt |
232 |
Q |
| |
|
||||| |
|
|
| T |
15239404 |
cactt |
15239408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 18282284 - 18282076
Alignment:
| Q |
24 |
tcagcggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtatc |
123 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||| || || || |||||||| ||||| | |||| || | || || | ||| |||||||| |||||| |
|
|
| T |
18282284 |
tcagcggggggtgctaggtgcatgtccccgtgtcgctggcatttgtcacaaaggttcatgtagtcttgggtgtccttcaacattgtaggccagtagtatc |
18282185 |
T |
|
| Q |
124 |
atgctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtcc |
223 |
Q |
| |
|
|||||||||| || |||||| |||||||| |||||||| ||||||| || ||||| | ||| | |||||| ||||||||||||||||| ||| |||| |
|
|
| T |
18282184 |
cggctcgtaggatctgtttagcgagagcttttgcaccaaggtgttgtccgcagatgccatcgtgaacgtcggcgaggacttcttgggtctcgttaagtcc |
18282085 |
T |
|
| Q |
224 |
catacactt |
232 |
Q |
| |
|
| |||||| |
|
|
| T |
18282084 |
taaacactt |
18282076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 31345 - 31137
Alignment:
| Q |
24 |
tcagcggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtatc |
123 |
Q |
| |
|
|||||||||||||| ||||| |||| || ||| || | || ||||| || ||||| || |||| || || ||||| ||||||||||||||| |||| | |
|
|
| T |
31345 |
tcagcggggggtgcaaggtgcatgtgcccgtgtcgccggcatttgtcgcaaaggtttacgtagtcttgggcgtctttcagcatggtaggccaatagtacc |
31246 |
T |
|
| Q |
124 |
atgctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtcc |
223 |
Q |
| |
|
||||||| ||||||||| || |||||||| |||||||||||||||| || ||||||| |||| |||||| |||||||||||||| || |||||||| |
|
|
| T |
31245 |
ccgctcgtaagacctttttcgcgagagcttttgcaccaagatgttgtccgcagatgccgtcatggacgtcggcgaggacttcttgggtatcgttaggtcc |
31146 |
T |
|
| Q |
224 |
catacactt |
232 |
Q |
| |
|
| |||||| |
|
|
| T |
31145 |
tagacactt |
31137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 147502 - 147374
Alignment:
| Q |
104 |
catggtaggccaaaagtatcatgctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggact |
203 |
Q |
| |
|
||||||||||||| |||||| | |||||| |||||||| || |||||||||| |||||||||||||| ||| ||||||| |||| ||| || |||||| |
|
|
| T |
147502 |
catggtaggccaatagtatcctcttcgtagtacctttttcgcgagagctttggaaccaagatgttgtccacagatgccgtcatggacgtcagcgaggact |
147403 |
T |
|
| Q |
204 |
tcttgggtctctttaggtcccatacactt |
232 |
Q |
| |
|
||||||||||| ||||||| || |||||| |
|
|
| T |
147402 |
tcttgggtctccttaggtcgcagacactt |
147374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 23530968 - 23531074
Alignment:
| Q |
126 |
gctcgtaggacctttttagcaagagctttggcaccaagatgttgtctacatatgccgtagtggatgtcggcaaggacttcttgggtctctttaggtccca |
225 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||||||||| || ||||||| |||| || || ||||||||||||||||| ||| || ||| |
|
|
| T |
23530968 |
gctcgtaggacctttttcgcaagagctttagcactaagatgttgtccgcagatgccgtcatggacatcagcgaggacttcttgggtctcgttaagtacca |
23531067 |
T |
|
| Q |
226 |
tacactt |
232 |
Q |
| |
|
|||||| |
|
|
| T |
23531068 |
gacactt |
23531074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 26619 - 26489
Alignment:
| Q |
24 |
tcagcggggggtgcgaggtgtatgtccctgtgccgttgacacttgtcacacaggttgacatagtttttcgcatcttttagcatggtaggccaaaagtatc |
123 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||| || || || |||||||| ||||| || |||| || || || || | ||||||||||||| |||||| |
|
|
| T |
26619 |
tcagcggggggtgcttggtgcatgtccccgtgtcgctggcatttgtcacaaaggtttacgtagtcttgggcgtccttcaacatggtaggccaatagtatc |
26520 |
T |
|
| Q |
124 |
atgctcgtaggacctttttagcaagagcttt |
154 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |
|
|
| T |
26519 |
cggctcgtaggatctttttagcgagagcttt |
26489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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