View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_high_27 (Length: 248)
Name: NF0886_high_27
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_27 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0383 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 32261752 - 32261524
Alignment:
| Q |
20 |
catcatcagatggatgatataattcaggaagttcctgacataaattgtttaatttagtaataagtacttcatcatctttggtccatgaccaaattgaatc |
119 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32261752 |
catcatcagatggatgatataattcaggaaggtcctgacataaattctttaatttagtaataagtacttcatcatcttcggtccatgaccaaattgaatc |
32261653 |
T |
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| Q |
120 |
cttcttaagtttttgctgtagtaactttctttcggcagcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaat |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32261652 |
cttcttaagtttttgctgaagtaactttctttcggctgcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaat |
32261553 |
T |
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| Q |
220 |
tcctttttatcttttagtttagttggaaa |
248 |
Q |
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|||||||||||||||| |||||||||||| |
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| T |
32261552 |
tcctttttatcttttaatttagttggaaa |
32261524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 23929465 - 23929693
Alignment:
| Q |
20 |
catcatcagatggatgatataattcaggaagttcctgacataaattgtttaatttagtaataagtacttcatcatctttggtccatgaccaaattgaatc |
119 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23929465 |
catcatcagatggatgatataattcaagaagttactgacataaattctttaatttagtaataagtacttcatcatctttggtccatgaccaaattgaatc |
23929564 |
T |
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| Q |
120 |
cttcttaagtttttgctgtagtaactttctttcggcagcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaat |
219 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23929565 |
cttcttaagtttttgttgtagtaactttctttcggctgcaagattatttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaat |
23929664 |
T |
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| Q |
220 |
tcctttttatcttttagtttagttggaaa |
248 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
23929665 |
tcctttttatcttttagtttagctggaaa |
23929693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0383 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0383
Description:
Target: scaffold0383; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 15400 - 15625
Alignment:
| Q |
20 |
catcatcagatggatgatataattcaggaagttcctgacataaattgtttaatttagtaataagtacttcatcatctttggtccatgaccaaattgaatc |
119 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15400 |
catcatcagatggatgatataattcaggaaggtcctgacataaattctttaatttagtaataagtacttcatcatcttcggtccatgaccaaattgaatc |
15499 |
T |
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| Q |
120 |
cttcttaagtttttgctgtagtaactttctttcggcagcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaat |
219 |
Q |
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|||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15500 |
cttcttaagtttttgctgaagtaacttactttcggctgcaagattttttataaaaccttcatatgaaatgtatgttagtaatcctaaaaacctttgtaat |
15599 |
T |
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| Q |
220 |
tcctttttatcttttagtttagttgg |
245 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
15600 |
tcctttttatcttttaatttagttgg |
15625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 20407384 - 20407156
Alignment:
| Q |
20 |
catcatcagatggatgatataattcaggaagttcctgacataaattgtttaatttagtaataagtacttcatcatctttggtccatgaccaaattgaatc |
119 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
20407384 |
catcatcagatggatgatataattcaggaaggtcctgacataaattcttttatttagtaataagtacttcatcatcttcggtccacgaccaaatttaatc |
20407285 |
T |
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| Q |
120 |
cttcttaagtttttgctgtagtaactttctttcggcagcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaat |
219 |
Q |
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||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20407284 |
cttcttaagtttttgcttaagtaactttctttcagctgcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaat |
20407185 |
T |
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| Q |
220 |
tcctttttatcttttagtttagttggaaa |
248 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20407184 |
tcctttttatcttttagtttagttggaaa |
20407156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 20420489 - 20420575
Alignment:
| Q |
162 |
attttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaattcctttttatcttttagtttagttggaaa |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
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| T |
20420489 |
attttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaccctttataattcctttttatcttttagttgagttggaaa |
20420575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 39 - 248
Target Start/End: Original strand, 23044 - 23253
Alignment:
| Q |
39 |
taattcaggaagttcctgacataaattgtttaatttagtaataagtacttcatcatctttggtccatgaccaaattgaatccttcttaagtttttgctgt |
138 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
23044 |
taattcaggaagttcctgacataaattctttaatttagtaataagtacttcatcatcttcggtccatgaccaaattgaatccttcttaagtttttgttgt |
23143 |
T |
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| Q |
139 |
agtaactttctttcggcagcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaattcctttttatcttttagtt |
238 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23144 |
agtaactttctttcggctgcaagattatttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttataattcctttttatcttttagtt |
23243 |
T |
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| Q |
239 |
tagttggaaa |
248 |
Q |
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|||||||||| |
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| T |
23244 |
tagttggaaa |
23253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 226
Target Start/End: Complemental strand, 29080567 - 29080369
Alignment:
| Q |
28 |
gatggatgatataattcaggaagttcctgacataaattgtttaatttagtaataagtacttcatcatctttggtccatgaccaaattgaatccttcttaa |
127 |
Q |
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|||||||||||||| || |||| || ||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| | ||||||||||| |
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| T |
29080567 |
gatggatgatataagtctcgaaggtctagacataaatattttaatttagtaacaagtacttcatcttctttggtccatgaccaaatagcatccttcttaa |
29080468 |
T |
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| Q |
128 |
gtttttgctgtagtaactttctttcggcagcaagattttttataaaaccttcatttgaaatgtatgttagtaatcctaaaaacctttgtaattcctttt |
226 |
Q |
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| || || || ||||||||||||| ||| ||||||||| |||||||| ||||||| |||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
29080467 |
gcttctgttgaagtaactttcttttggctgcaagatttcttataaaatcttcattcgaaatgtatgttagtaatcctagaaacctgtgtagttcctttt |
29080369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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