View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_high_28 (Length: 247)
Name: NF0886_high_28
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_28 |
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| [»] scaffold0192 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: scaffold0192 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 3382 - 3161
Alignment:
| Q |
21 |
atcatcaaattctaaaggaagtggagcaggggtagttgtagaaaacagagaaggtagtgtcgttgaaatctcccttggtttgtctttccctgtaactaac |
120 |
Q |
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| T |
3382 |
atcatccaattctaaaggaagtggagcaggggtaattgtagaaaacagagaaggtagtgtcgttgaaatctcccttggtttgtctttccctataactaac |
3283 |
T |
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| Q |
121 |
aacattgcagagtacgaagccttcttagccggcctgcagatcgctctggatctaggagcccgaaaggtaaaaatcttcgttgtttcccaagtagtggctt |
220 |
Q |
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| T |
3282 |
aacactgcagagtacgaagccttcttagccggcctgcag-----tctggatctaggagcccgaaaggtaaaaatctttgttgtttcccaattagtggctt |
3188 |
T |
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| Q |
221 |
cgtaagtgactggcgattaccaggtcc |
247 |
Q |
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| T |
3187 |
cgtaagtgactggcgattaccaggtcc |
3161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 16920221 - 16920005
Alignment:
| Q |
21 |
atcatcaaattctaaaggaagtggagcaggggtagttgtagaaaacagagaaggtagtgtcgttgaaatctcccttggtttgtctttccctgtaactaac |
120 |
Q |
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| T |
16920221 |
atcatccaattctaaaggaagcggagcaggggtaattgtagaaaaaaatgaaggtattgtcgttgaatt-tcccttattttatcttttcctgtaactaac |
16920123 |
T |
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| Q |
121 |
aacattgcagagtacgaagccttcttagccggcctgcagatcgctctggatctaggagcccgaaaggtaaaaatcttcgttgtttcccaagtagtggctt |
220 |
Q |
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| T |
16920122 |
aacactgcagagtacgaagccttcttggccggcctgcggatcgcccaggatctaggaaccaaaaaggtaaaaatctttaccgattctcaattagtggctt |
16920023 |
T |
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| Q |
221 |
cgtaagtgactggcgatt |
238 |
Q |
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| T |
16920022 |
cgcaggtgactcgcgatt |
16920005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 22456093 - 22456261
Alignment:
| Q |
79 |
gtcgttgaaatctcccttggtttgtctttccctgtaactaacaacattgcagagtacgaagccttcttagccggcctgcagatcgctctggatctaggag |
178 |
Q |
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| T |
22456093 |
gtcgttgaaatctcccttggcttatcttttcctgtgactaacaacactgtagaatatgaggccttcttagccggcctgcggatcgcccaggatttaggag |
22456192 |
T |
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| Q |
179 |
cccgaaaggtaaaaatcttcgttgtttcccaagtagtggcttcgtaagtgactggcgattaccaggtcc |
247 |
Q |
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| T |
22456193 |
ccagaaaggtaaaattctttaccgattcacaattagtggcttcccaagttactggcgaataccaggtcc |
22456261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 384391 - 384325
Alignment:
| Q |
85 |
gaaatctcccttggtttgtctttccctgtaactaacaacattgcagagtacgaagccttcttagccg |
151 |
Q |
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| T |
384391 |
gaaatttctcttgctttatctttccctgtaaccaataacactgcagggtacgaagccttcttggccg |
384325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 30596 - 30648
Alignment:
| Q |
94 |
cttggtttgtctttccctgtaactaacaacattgcagagtacgaagccttctt |
146 |
Q |
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|||| ||| |||||||| ||||| || |||| ||||||||||||||||||||| |
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| T |
30596 |
cttgctttatctttccccgtaaccaataacactgcagagtacgaagccttctt |
30648 |
T |
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