View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_high_3 (Length: 414)
Name: NF0886_high_3
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 290 - 393
Target Start/End: Complemental strand, 27896839 - 27896736
Alignment:
| Q |
290 |
atgagttatagttgcacgataactttcaattcaatcttttgttcaggtaatcaatttaacgcgtatatttttgttgaaccattgttgtttacattatgat |
389 |
Q |
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| T |
27896839 |
atgagttatagttgcacgataactttcaattcaatcttttgttcaggtaatcaatttaacgcgtatatttttgttgaaccattgttgtttacattatgat |
27896740 |
T |
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| Q |
390 |
gatg |
393 |
Q |
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|||| |
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| T |
27896739 |
gatg |
27896736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 27897848 - 27897729
Alignment:
| Q |
30 |
gtgatgatccttaaaccaactttgtgacatacgtattagccaagaaaatagtaaagaaaaccatattaataaaggggttatagtagtataagctaggctt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27897848 |
gtgatgatccttaaaccaactttgtgacatacgtattagccaagaaaa------------ccatattaataaaggggttatagtagtataagctaggctt |
27897761 |
T |
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| Q |
130 |
gagtccaacataatggtctaaaattacatagt |
161 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27897760 |
gagtccaacataatggtctaaaattacatagt |
27897729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 27897502 - 27897447
Alignment:
| Q |
157 |
atagtgaatcaaaaattgattaaaacatataaaaacaatattcacatgtaatgtcc |
212 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
27897502 |
atagtgaatcaaaaattgattcagacatataaaaacaatattcacatgtaatgtcc |
27897447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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