View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0886_high_4 (Length: 390)

Name: NF0886_high_4
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0886_high_4
NF0886_high_4
[»] chr3 (13 HSPs)
chr3 (52-385)||(12033395-12033727)
chr3 (52-385)||(17131504-17131837)
chr3 (52-385)||(14865618-14865951)
chr3 (52-346)||(19235057-19235351)
chr3 (52-340)||(13302235-13302521)
chr3 (52-340)||(13323782-13324069)
chr3 (52-340)||(13312891-13313177)
chr3 (153-350)||(51301466-51301659)
chr3 (279-385)||(23370455-23370560)
chr3 (275-350)||(10389428-10389502)
chr3 (275-350)||(10414517-10414591)
chr3 (275-350)||(10421187-10421261)
chr3 (52-310)||(17240536-17240794)
[»] chr1 (6 HSPs)
chr1 (52-385)||(21710591-21710923)
chr1 (52-385)||(20851082-20851415)
chr1 (52-385)||(20857709-20858042)
chr1 (52-385)||(21706048-21706381)
chr1 (101-253)||(19663600-19663750)
chr1 (194-310)||(18712714-18712831)
[»] chr7 (12 HSPs)
chr7 (52-385)||(20906411-20906742)
chr7 (52-385)||(16090847-16091181)
chr7 (52-385)||(29181058-29181392)
chr7 (52-240)||(2966737-2966926)
chr7 (243-385)||(2971219-2971359)
chr7 (52-346)||(2465136-2465427)
chr7 (146-378)||(14230648-14230879)
chr7 (146-385)||(14319579-14319817)
chr7 (52-343)||(3857357-3857647)
chr7 (281-350)||(31155396-31155464)
chr7 (52-253)||(21231042-21231242)
chr7 (322-385)||(14567246-14567309)
[»] chr8 (4 HSPs)
chr8 (52-385)||(24320620-24320953)
chr8 (52-334)||(29643386-29643668)
chr8 (193-310)||(18614186-18614304)
chr8 (146-310)||(23482076-23482240)
[»] scaffold0023 (1 HSPs)
scaffold0023 (52-385)||(135212-135543)
[»] chr2 (9 HSPs)
chr2 (56-384)||(25180880-25181200)
chr2 (52-375)||(10349-10672)
chr2 (200-385)||(26885103-26885287)
chr2 (146-385)||(27207669-27207907)
chr2 (153-385)||(23168249-23168483)
chr2 (153-385)||(23579506-23579740)
chr2 (194-310)||(23265057-23265174)
chr2 (194-310)||(23280125-23280242)
chr2 (316-350)||(27366533-27366567)
[»] scaffold0053 (1 HSPs)
scaffold0053 (52-385)||(79439-79773)
[»] scaffold0072 (1 HSPs)
scaffold0072 (52-385)||(49919-50254)
[»] chr5 (17 HSPs)
chr5 (52-385)||(19236673-19237005)
chr5 (52-385)||(22460928-22461261)
chr5 (52-385)||(22467552-22467885)
chr5 (52-346)||(20772743-20773035)
chr5 (52-346)||(20781518-20781810)
chr5 (52-346)||(24929917-24930211)
chr5 (187-343)||(20820126-20820279)
chr5 (187-343)||(20827226-20827379)
chr5 (56-385)||(28909240-28909566)
chr5 (56-385)||(28945635-28945961)
chr5 (56-385)||(28895992-28896318)
chr5 (56-385)||(28924818-28925144)
chr5 (56-343)||(28889329-28889614)
chr5 (154-342)||(34829960-34830146)
chr5 (153-310)||(18407967-18408125)
chr5 (194-310)||(23111223-23111340)
chr5 (52-92)||(23111442-23111482)
[»] chr4 (4 HSPs)
chr4 (52-373)||(16146791-16147113)
chr4 (153-342)||(27906139-27906328)
chr4 (220-303)||(14486601-14486685)
chr4 (153-253)||(15408012-15408112)
[»] scaffold0348 (1 HSPs)
scaffold0348 (52-340)||(9109-9396)
[»] chr6 (11 HSPs)
chr6 (52-385)||(20007897-20008230)
chr6 (52-346)||(9099060-9099354)
chr6 (52-385)||(21364433-21364761)
chr6 (52-385)||(23968415-23968743)
chr6 (155-350)||(31252299-31252493)
chr6 (281-350)||(15458492-15458560)
chr6 (281-350)||(15465087-15465155)
chr6 (52-202)||(29097637-29097789)
chr6 (281-350)||(11288653-11288721)
chr6 (316-350)||(24563474-24563508)
chr6 (322-350)||(28288494-28288522)
[»] scaffold1318 (1 HSPs)
scaffold1318 (193-385)||(1862-2053)
[»] scaffold1469 (1 HSPs)
scaffold1469 (52-350)||(1130-1425)
[»] scaffold0384 (1 HSPs)
scaffold0384 (94-340)||(16059-16303)
[»] scaffold0131 (1 HSPs)
scaffold0131 (56-385)||(776-1101)
[»] scaffold0127 (1 HSPs)
scaffold0127 (153-385)||(10115-10344)
[»] scaffold0609 (1 HSPs)
scaffold0609 (155-350)||(5842-6036)
[»] scaffold0001 (1 HSPs)
scaffold0001 (200-385)||(492978-493162)
[»] scaffold0029 (2 HSPs)
scaffold0029 (52-346)||(91191-91485)
scaffold0029 (52-346)||(96917-97211)
[»] scaffold0261 (1 HSPs)
scaffold0261 (153-342)||(23562-23751)
[»] scaffold0720 (1 HSPs)
scaffold0720 (146-378)||(3359-3590)
[»] scaffold0553 (1 HSPs)
scaffold0553 (279-385)||(10145-10250)
[»] scaffold0544 (1 HSPs)
scaffold0544 (279-385)||(1475-1580)
[»] scaffold0034 (1 HSPs)
scaffold0034 (153-342)||(73158-73347)
[»] scaffold0453 (1 HSPs)
scaffold0453 (153-339)||(10546-10731)
[»] scaffold0249 (1 HSPs)
scaffold0249 (281-350)||(13879-13947)
[»] scaffold0222 (1 HSPs)
scaffold0222 (194-310)||(16735-16852)
[»] scaffold0183 (1 HSPs)
scaffold0183 (281-346)||(6-70)
[»] scaffold0124 (1 HSPs)
scaffold0124 (101-253)||(34359-34509)
[»] scaffold0107 (1 HSPs)
scaffold0107 (142-253)||(40614-40725)
[»] scaffold0146 (1 HSPs)
scaffold0146 (194-310)||(13547-13664)
[»] scaffold0085 (1 HSPs)
scaffold0085 (52-86)||(3921-3955)
[»] scaffold0019 (1 HSPs)
scaffold0019 (52-253)||(135245-135446)
[»] scaffold1461 (1 HSPs)
scaffold1461 (226-334)||(1485-1592)
[»] scaffold0099 (1 HSPs)
scaffold0099 (138-269)||(12815-12951)
[»] scaffold0461 (1 HSPs)
scaffold0461 (153-310)||(31-189)
[»] scaffold0026 (1 HSPs)
scaffold0026 (279-350)||(111686-111756)
[»] scaffold0004 (1 HSPs)
scaffold0004 (194-310)||(116811-116928)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 12033727 - 12033395
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  12033727 catcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcaattcaattacgatcaacatcaaca 12033628  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaa 249  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12033627 acatagattaagaaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatttcccaa 12033528  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  12033527 ttttacctt-aagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 12033430  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  12033429 a-agcacatcaaatcagttcctaagttcttctctct 12033395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 17131504 - 17131837
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaa-gcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||||||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17131504 catcaacaacaacaattcagctcatttaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 17131603  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttcccaa 249  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||    
T  17131604 acatagattaagaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaa 17131703  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17131704 ttttacc-ttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 17131801  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  17131802 aaagcacagcaaatcagttcctaagttcttctctct 17131837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 14865618 - 14865951
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  14865618 catcaacaacaacaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 14865717  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaa 249  Q
    |||| ||||||||||||||||||| ||||  |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  14865718 acatggattaagaaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaatcatcattaaccattattttcccaa 14865817  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  14865818 ttttacc-ttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 14865915  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    ||||||||  |||||||||||||||||||| |||||    
T  14865916 atagcacagcaaatcagttcctaagttcttctctct 14865951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 52 - 346
Target Start/End: Complemental strand, 19235351 - 19235057
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattcc-aattacaatcaacatcaac 149  Q
    ||||||||||||||||| |  ||| |||| ||||||| || | ||||||||||||||| ||||||||||||||||| ||| |||||  ||||| ||||||    
T  19235351 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatcaac 19235252  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttccca 248  Q
    || |||||||| ||||||||||||| ||||| | || |||||||||||||||||||||| || ||||| |||| |||||||||||||||| || ||||||    
T  19235251 aatatagattaggaaatcatactaatcatca-aatacaacattataaacctgattcttacacattttc-ttcagaatcatcattaaccctaaatttccca 19235154  T
Q  249 attttacctttaagaacagttcaattgattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    |||||||| |||||||||||| |||||||||| ||||||||| | ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  19235153 attttacc-ttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaaga-taatcccacccttaccttagaattgcaaaga 19235057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 340
Target Start/End: Complemental strand, 13302521 - 13302235
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||||||||||||  ||||| |||| ||||||||  ||||| || |||||||| ||||||||| |||||||||||||   |||| || |||||    
T  13302521 catcaacaacaacaattcagagcattctagcaatcatacaaaacttcccaa-ttcatccaacatattctaatttcattccaattctgatca-caacaaca 13302424  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaat 250  Q
      |||  ||||||||  ||||| |||| ||   || ||||   |||||   ||||||| ||| || ||||| || ||||||| |||||| ||||||| ||    
T  13302423 ttataagttaagaaaatatactgaacaccaatttacaacacattaaacacaattcttacaccattcctttcgaagtcatcatcaaccctaaattccccat 13302324  T
Q  251 tttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattg 340  Q
    |||| ||| ||||||| | || ||||||||||||||||| ||| ||||||||| ||||||||||  |||| |||||||||||||||||||    
T  13302323 tttatcttcaagaacaatgcatttgattaattttcagaaattacatattatgattattgaaaga-taatctcacccttaccttagaattg 13302235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 340
Target Start/End: Complemental strand, 13324069 - 13323782
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||||||||||||  ||||| |||| ||||||||  ||||| || |||||||| ||||||||| |||||||||||||   |||| || |||||    
T  13324069 catcaacaacaacaattcagagcattctagcaatcatacaaaacttcccaa-ttcatccaacatattctaatttcattccaattctgatca-caacaaca 13323972  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaat 250  Q
      |||  ||||||||  ||||| |||| ||   || ||||   |||||   ||||||| ||| || ||||| || ||||||| |||||| ||||||||||    
T  13323971 ttataagttaagaaaatatactgaacaccaatttacaacacattaaacacaattcttacaccattcctttcgaagtcatcatcaaccctaaattcccaat 13323872  T
Q  251 tttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattg 340  Q
    |||| ||| ||||||| |  |||| ||||||||||||||| ||| ||||||||| ||||||||||  |||| |||||||||||||||||||    
T  13323871 tttatcttcaagaacaatctaatttgattaattttcagaaattacatattatgattattgaaaga-taatctcacccttaccttagaattg 13323782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 340
Target Start/End: Complemental strand, 13313177 - 13312891
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||||||||||||  ||||| |||| ||||||||  ||||| || |||||||| ||||||||| |||||||||||||   |||| || |||||    
T  13313177 catcaacaacaacaattcagagcattctagcaatcatacaaaacttcccaa-ttcatccaacatattctaatttcattccaattctgatca-caacaaca 13313080  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaat 250  Q
      |||  ||||||||  ||||| |||| ||   || ||||   |||||   ||||||| ||| || ||||| || ||||||| |||||| ||||||| ||    
T  13313079 ttataagttaagaaaatatactgaacaccaatttacaacacattaaacacaattcttacaccattcctttcgaagtcatcatcaaccctaaattccctat 13312980  T
Q  251 tttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattg 340  Q
    |||| ||| ||||||| | || |||||||||||||| || ||| ||||||||| ||||||||||  |||| |||||||||||||||||||    
T  13312979 tttatcttcaagaacaatccatttgattaattttcaaaaattacatattatgattattgaaaga-taatctcacccttaccttagaattg 13312891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 350
Target Start/End: Original strand, 51301466 - 51301659
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaa-acattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaatt 251  Q
    ||||||||||||||||| |||||||  | | |||| ||||||  ||||||||||||  ||| |  |||||||| | | ||| |||||| |||||||||||    
T  51301466 atagattaagaaatcattctaaacactaaactaaacacatta--aacctgattcttgcaccatccctttcaaatt-agcatcaaccct-aattcccaatt 51301561  T
Q  252 ttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    |||   | | ||||| |||||||||||||||||||||| ||| ||||||||| ||||| ||||  |||| |||||||||||||||||||| ||||||||    
T  51301562 ttattctcatgaacaattcaattgattaattttcagaaattacatattatgattattggaaga-taatctcacccttaccttagaattgcgaagacaaa 51301659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 23370560 - 23370455
Alignment:
Q  279 aattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatagcacaataaatcagttcctaagttct 378  Q
    ||||||||||| ||||| ||||||| |||||| ||| |  |||||||||||||||||||||| | ||||||| ||||||  ||||| |||||||||||||    
T  23370560 aattttcagaaattatagattatgattattgagagatag-tcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttct 23370462  T
Q  379 tttctct 385  Q
    | |||||    
T  23370461 tctctct 23370455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 10389502 - 10389428
Alignment:
Q  275 gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||| ||||||||| ||||| ||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  10389502 gattacttttcagaaattatacattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 10389428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 10414591 - 10414517
Alignment:
Q  275 gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||| ||||||||| ||||| ||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  10414591 gattacttttcagaaattatacattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 10414517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 350
Target Start/End: Complemental strand, 10421261 - 10421187
Alignment:
Q  275 gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||| ||||||||| ||||| ||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  10421261 gattacttttcagaaattatacattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 10421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 310
Target Start/End: Complemental strand, 17240794 - 17240536
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaa 151  Q
    ||||||||||||||||||||  ||||| |||| |||||||| ||||   |||| ||||| || || ||| |||| ||| ||||   |||| || |||||     
T  17240794 catcaacaacaacaattcagatcattctagcaatcatacaaacttctccaatttatccaacaaatcctaatttccttcaaattctgatca-cagcaacat 17240696  T
Q  152 catagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-t 250  Q
     ||||||||| |||||||  | ||||  | | ||||| |   ||||| ||||||||| ||| || |||||||||||| ||| ||||| |||||||||| |    
T  17240695 tatagattaataaatcattttgaacactaaattaaaatacgttaaacatgattcttacaccattcctttcaaaatcagcatcaaccc-taattcccaatt 17240597  T
Q  251 tttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattga 310  Q
    ||||  || ||||||| ||||||| ||| ||||||||||| |||| ||||| || ||||||    
T  17240596 tttattttcaagaacaattcaattagatcaattttcagaaattatgtattaagattattga 17240536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 21710591 - 21710923
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaa-gcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  21710591 catcaacaacaacaattcagcccattcaagcattcatacaaagcttccaaaattcatccatcatattctattttcattccaattatgatcaacatcaaca 21710690  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttcccaa 249  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||| | |||||| || |||||||    
T  21710691 acatagattaaggaatcatactaaacatca-agtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaatttcccaa 21710789  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  21710790 ttttacc-ttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 21710887  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  21710888 aaagcacagcaaatcagttcctaagttcttctctct 21710923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 20851415 - 20851082
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  20851415 catcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaaca 20851316  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaa 249  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||    
T  20851315 acatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaa 20851216  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20851215 ttttacctt-aagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 20851118  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  20851117 aaagcacagcaaatcagttcctaagttcttctctct 20851082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 20858042 - 20857709
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  20858042 catcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaaca 20857943  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaa 249  Q
    ||||||||||||||| |||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||    
T  20857942 acatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaa 20857843  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  20857842 ttttacctt-aagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 20857745  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  20857744 aaagcacagcaaatcagttcctaagttcttctctct 20857709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 21706048 - 21706381
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  21706048 catcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaaca 21706147  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttcccaa 249  Q
    ||||||||||||||| |||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||    
T  21706148 acatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaa 21706247  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  21706248 ttttacc-ttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 21706345  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  21706346 aaagcacagcaaatcagttcctaagttcttctctct 21706381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 19663750 - 19663600
Alignment:
Q  101 aattcatccatcatattctattttcattccaattacaatcaacatcaacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacct 200  Q
    |||| ||||| || |||||| |||||||||||||   |||| || |||||  ||||||||||||||||| || ||||||| | || ||||   ||||| |    
T  19663750 aatttatccaacagattctaatttcattccaattctgatca-cagcaacattatagattaagaaatcattctgaacatcaaattacaacacattaaacat 19663652  T
Q  201 gattcttataccttttctttcaaaatcatcattaacccttaattcccaatttt 253  Q
     ||||||| ||| || |||||||||||| ||| ||||| ||||||||||||||    
T  19663651 aattcttacaccattcctttcaaaatcagcatcaaccc-taattcccaatttt 19663600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 18712714 - 18712831
Alignment:
Q  194 taaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-ttttacctttaagaacagttcaatt-gattaattttcagaagt 291  Q
    ||||| ||||||||| ||| || |||||||||||| ||| ||||| ||||||  || |||||  || ||||||| ||||||| ||| ||||||||||| |    
T  18712714 taaacatgattcttacaccattcctttcaaaatcagcatcaaccc-taattctaaatttttaatttcaagaacaattcaattagatcaattttcagaaat 18712812  T
Q  292 tatatattatgactattga 310  Q
    |||||| ||||| ||||||    
T  18712813 tatatactatgattattga 18712831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 20906742 - 20906411
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaa 151  Q
    ||||||||||||||||||||||||||||||||||| |||||   | |  |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  20906742 catcaacaacaacaattcagcccattcaagcattcttacaaaacttctcaattcatccatcatattctattttcatttcaattacgatcaacatcaacaa 20906643  T
Q  152 catagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaatt 251  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20906642 catagattaagaaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaattcccaatt 20906543  T
Q  252 ttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaat 351  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  20906542 ttacc-ttaagaatagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaggacaaat 20906445  T
Q  352 agcacaataaatcagttcctaagttcttttctct 385  Q
    ||| ||  ||||| |||||||||||||| |||||    
T  20906444 agctcagcaaatccgttcctaagttcttctctct 20906411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 16090847 - 16091181
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| |||||||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  16090847 catcaacaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 16090946  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaa 249  Q
    |||| ||||||||||||||||||| |||   | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  16090947 acatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaa 16091046  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| ||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  16091047 ttttacc-ttaggaacagtttaattgattaactttcagaaattacatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 16091144  T
Q  350 atagcaca-ataaatcagttcctaagttcttttctct 385  Q
    ||||||||   |||||||||||||||||||| |||||    
T  16091145 atagcacagcaaaatcagttcctaagttcttctctct 16091181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 29181392 - 29181058
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  29181392 catcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 29181293  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa- 249  Q
    |||| ||||||||||||||||||| |||   | || |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||     
T  29181292 acatggattaagaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaa 29181193  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||||| ||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  29181192 ttttacctt-aagaatagtttaattgattaattttcagaaattacatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 29181095  T
Q  350 atagcaca-ataaatcagttcctaagttcttttctct 385  Q
    ||||||||   |||||||||||||||||||| |||||    
T  29181094 atagcacagcaaaatcagttcctaagttcttctctct 29181058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 52 - 240
Target Start/End: Original strand, 2966737 - 2966926
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2966737 catcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaaca 2966836  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctt 240  Q
    |||| ||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  2966837 acatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcattaaccctt 2966926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 243 - 385
Target Start/End: Original strand, 2971219 - 2971359
Alignment:
Q  243 ttcccaattttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgca 342  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||    
T  2971219 ttcccaattttacctt-aagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataa-tcccacccttaccttagaattgca 2971316  T
Q  343 aagacaaatagcacaataaatcagttcctaagttcttttctct 385  Q
    |||||||| ||||||  |||||||||||||||||||| |||||    
T  2971317 aagacaaaaagcacagcaaatcagttcctaagttcttctctct 2971359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 346
Target Start/End: Original strand, 2465136 - 2465427
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    |||||||||||||||||||  | | |||| ||||||| || | ||| ||||| ||||||||| ||||||||  ||||| |||||||  ||||||||||||    
T  2465136 catcaacaacaacaattcattcaaatcaa-cattcattcagaactttcaaaacttcatccattatattctaccttcat-ccaattatgatcaacatcaac 2465233  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa 249  Q
    || | ||| || ||||||||| ||| ||||| | || |||||||||||||| | ||||| || ||||||| ||||||   |||||||||| | |||||||    
T  2465234 aatacagagtaggaaatcatattaatcatcaaa-tataacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaatttcccaa 2465331  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    ||||  |  ||| ||||||| ||||| ||||||||||||| | ||||||||| | ||||||| ||   |||||||||||||||||||||||||||||    
T  2465332 tttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaagga-tgatcccacccttaccttagaattgcaaaga 2465427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 378
Target Start/End: Original strand, 14230648 - 14230879
Alignment:
Q  146 caacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattc 245  Q
    ||||| ||||||||||||||||||||  || |||| | || |||||  ||||| ||||||||| |||||| ||||||||||||   | |  || ||||||    
T  14230648 caacatcatagattaagaaatcatacagaatatcaaattacaacatattaaacatgattcttacaccttt-ctttcaaaatcagtctcataccctaattc 14230746  T
Q  246 ccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaa 344  Q
     |||||||| ||| ||||||  |||  || ||||||||||||||| ||||| ||||     |||||||||  ||||||||||||||||||||||||||||    
T  14230747 tcaattttatcttcaagaactattcttttagattaattttcagaaattatacattaaattcattgaaaga-taatcccacccttaccttagaattgcaaa 14230845  T
Q  345 gacaaatagcacaataaatcagttcctaagttct 378  Q
    |||||| ||||| | ||||| |||||||||||||    
T  14230846 gacaaaaagcacgacaaatccgttcctaagttct 14230879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 385
Target Start/End: Complemental strand, 14319817 - 14319579
Alignment:
Q  146 caacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattc 245  Q
    ||||| ||||||||||||||| ||||  || |||| | |  |||||  ||||| ||||||||| |||||| ||||||||||||   | |  || ||||||    
T  14319817 caacatcatagattaagaaattatacagaatatcaaattgcaacatattaaacatgattcttacaccttt-ctttcaaaatcagtctcataccctaattc 14319719  T
Q  246 ccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaa 344  Q
     |||||||| ||| ||||||  |||  || ||||||||||||||| ||||| ||||  |  ||||||||| || ||||||||||||||||||||||||||    
T  14319718 tcaattttatcttcaagaactattcttttagattaattttcagaaattatacattaaaatcattgaaagataa-tcccacccttaccttagaattgcaaa 14319620  T
Q  345 gacaaatagcacaataaatcagttcctaagttcttttctct 385  Q
    |||||| ||||||  ||||| |||||||||||||| |||||    
T  14319619 gacaaaaagcacagcaaatccgttcctaagttcttctctct 14319579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 343
Target Start/End: Complemental strand, 3857647 - 3857357
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    |||||||||||||||||||  | | |||| ||||||| || | ||| ||||| |||||| || ||||||||  ||||| ||||||| |||||||||||||    
T  3857647 catcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatctattatattctaccttcat-ccaattataatcaacatcaac 3857549  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa 249  Q
    || | ||| || ||||||||| ||| ||||| | || |||||||||||||| | ||||| || ||||||| ||||||   |||||||||| | |||||||    
T  3857548 aatacagagtaggaaatcatattaatcatcaaa-tacaacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaatttcccaa 3857451  T
Q  250 tttt---acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaa 343  Q
    ||||   ||| | || ||||||| ||||| ||||||||||||| | ||||||||| | |||||||   |  ||||||||||||||||||||||||||    
T  3857450 tttttttaccataaa-aacagttaaattgcttaattttcagaaatcatatattatcattattgaagatg--atcccacccttaccttagaattgcaa 3857357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 31155396 - 31155464
Alignment:
Q  281 ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||||||| ||||||||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 31155464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 253
Target Start/End: Complemental strand, 21231242 - 21231042
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatac-aagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||||||||||||  ||||| |||| |||||| || ||||   |||| ||||| || |||||| |||||||| ||||   ||| ||| |||||    
T  21231242 catcaacaacaacaattcagatcattctagcaatcatacaaaacttctccaatttatccaacagattctaatttcattcaaattctgatc-acaacaaca 21231144  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaat 250  Q
      ||||||||||||||||| || |||| || | || ||||   ||||| ||||||||| ||| || |||||| ||||| ||| ||||| |||||||||||    
T  21231143 ttatagattaagaaatcattctgaacaccaaattacaacacattaaacatgattcttacaccattcctttcagaatcagcatcaaccc-taattcccaat 21231045  T
Q  251 ttt 253  Q
    |||    
T  21231044 ttt 21231042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 14567246 - 14567309
Alignment:
Q  322 cacccttaccttagaattgcaaagacaaatagcacaataaatcagttcctaagttcttttctct 385  Q
    ||||||||||||||||||| | ||||||| ||||||  ||||| |||||||||||||| |||||    
T  14567246 cacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttcttctctct 14567309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 24320953 - 24320620
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  24320953 catcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaaca 24320854  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaa 249  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||||||||| | |||||||||||||||||||||||| |||||||| |||| |||||    
T  24320853 acatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaatttcccaa 24320754  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  24320753 ttttacctt-aagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 24320656  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  24320655 aaagcacagcaaatcagttcctaagttcttctctct 24320620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 334
Target Start/End: Complemental strand, 29643668 - 29643386
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaa 151  Q
    ||||| ||||||||||||||  ||||| |||| ||||||||   | || |||||||||| |||||||||||||||||||||||   ||||  |||||||     
T  29643668 catcatcaacaacaattcagagcattctagcaatcatacaaaacttcacaattcatccaacatattctattttcattccaattctgatcacaatcaacat 29643569  T
Q  152 catagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaatt 251  Q
     |||||||||||||||||||| |||| || | || ||||  || ||||  ||||||| |||  | ||| | |||||||||| |||||||||||| |||||    
T  29643568 tatagattaagaaatcatactgaacaccaaattacaacacaattaacccaattcttacaccaatccttcctaaatcatcatcaacccttaattctcaatt 29643469  T
Q  252 ttacctttaagaacagttcaa-ttgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttacctta 334  Q
    ||| ||| | ||||| ||||| ||||||||||||||||| ||| ||||||||| ||||||||||  |||| |||||||||||||    
T  29643468 ttatcttcatgaacaattcaatttgattaattttcagaaattacatattatgattattgaaaga-taatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 18614186 - 18614304
Alignment:
Q  193 ataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaattg-attaattttcagaagt 291  Q
    |||||| | ||||||| ||| || ||||| |||||| ||| || || |||||| |||||||| ||| ||||||| |||||||| || ||||||||||| |    
T  18614186 ataaacataattcttacaccattcctttctaaatcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaat 18614285  T
Q  292 tatatattatgactattga 310  Q
    ||||||| |||| ||||||    
T  18614286 tatatatcatgattattga 18614304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 146 - 310
Target Start/End: Complemental strand, 23482240 - 23482076
Alignment:
Q  146 caacaacatagattaagaaatcatactaaacatcacagtaaa-acattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt 244  Q
    |||||| ||||||||||||||||| ||||||   | | |||| ||||||  ||| ||||||||| ||| |  |||||||||||| ||| |||||| ||||    
T  23482240 caacaatatagattaagaaatcattctaaaccctaaactaaacacatta--aacatgattcttacaccatccctttcaaaatcagcatcaaccct-aatt 23482144  T
Q  245 cccaattttaccttt-aagaacagttcaatt-gattaattttcagaagttatatattatgactattga 310  Q
    |||||||||   ||| ||||||| ||||||| ||| ||||||||||| ||||||| ||||| ||||||    
T  23482143 cccaatttttattttcaagaacaattcaattagatcaattttcagaaattatatactatgattattga 23482076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 135212 - 135543
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||| || ||||||||||||||||||||||||||||||||   ||||  |||||||    
T  135212 catcaacaacaacaattcagcccattcaagcattcatacaaaacttcccaa-ttcatccatcatattctattttcattccaattttgatcacgatcaaca 135310  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaat 250  Q
    |||||||||||||||||||||||| ||||| | || ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  135311 acatagattaagaaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaattctcaat 135409  T
Q  251 tttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||| |||||||||||||||||||||||||    
T  135410 tttacctttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatctcacgcttaccttagaattgcaaagacaaa 135508  T
Q  351 tagcacaataaatcagttcctaagttcttttctct 385  Q
    |||||||  ||||||||||||||| |||| |||||    
T  135509 tagcacagcaaatcagttcctaagctcttctctct 135543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 56 - 384
Target Start/End: Complemental strand, 25181200 - 25180880
Alignment:
Q  56 aacaacaacaattcagcccattcaagcattcatacaagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacata 155  Q
    ||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25181200 aacaacaacaattcaacccattcaagca-------aagcttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaacata 25181108  T
Q  156 gattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaatttta 254  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||||   |||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  25181107 gattaagaaatcatactaaacatcaaagtacaaaaatataaacctgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaatttta 25181008  T
Q  255 cctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatagc 354  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  25181007 cctt-aagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaaaaagc 25180910  T
Q  355 acaataaatcagttcctaagttcttttctc 384  Q
    |||  |||||||||||||||||||| ||||    
T  25180909 acagcaaatcagttcctaagttcttctctc 25180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 52 - 375
Target Start/End: Original strand, 10349 - 10672
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaa-gcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| |||||| |  ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10349 catcaacaacatcaattcggttcattcaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacgatcagcatcaaca 10448  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttcccaa 249  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||||||| || | |||||||||||||||||||||||| |||||||| || |||||||    
T  10449 acatagattaagaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaatttcccaa 10548  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  10549 ttttacc-ttaagaacaattcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaatttcaaagacaa 10646  T
Q  350 atagcacaataaatcagttcctaagt 375  Q
    | ||||||  ||||||||||||||||    
T  10647 aaagcacagcaaatcagttcctaagt 10672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 385
Target Start/End: Original strand, 26885103 - 26885287
Alignment:
Q  200 tgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatat 298  Q
    ||||||||| ||||||||||||||||| | |||||  || |||||| |||||||  ||  ||||||  ||| ||| ||||||||||||||| ||||| ||    
T  26885103 tgattcttacaccttttctttcaaaattagcattataccctaattctcaattttttctccaagaactattccattagattaattttcagaaattatacat 26885202  T
Q  299 tatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatagcacaataaatcagttcctaagttcttttctct 385  Q
    || || |||||||||| || |||||||||||||||||||||||| ||||||| ||||||  ||||| |||||||||||||| |||||    
T  26885203 ta-gattattgaaagataa-tcccacccttaccttagaattgcagagacaaaaagcacatcaaatccgttcctaagttcttctctct 26885287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 385
Target Start/End: Complemental strand, 27207907 - 27207669
Alignment:
Q  146 caacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattc 245  Q
    ||||| ||||||||||||||| ||||  || |||| | |  |||||  ||||| ||||||||| |||||| ||||||||||||   | |  || ||||||    
T  27207907 caacatcatagattaagaaattatacagaatatcaaattgcaacatattaaacatgattcttacaccttt-ctttcaaaatcagtctcataccctaattc 27207809  T
Q  246 ccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaa 344  Q
     |||||||| ||| ||||||  |||  || ||||||||||||||| ||||| ||||  |  ||||||||| || ||||||||||||||||||||||||||    
T  27207808 tcaattttatcttcaagaactattcttttagattaattttcagaaattatacattaaaatcattgaaagataa-tcccacccttaccttagaattgcaaa 27207710  T
Q  345 gacaaatagcacaataaatcagttcctaagttcttttctct 385  Q
    |||||| ||||||  ||||| |||||||||||||| |||||    
T  27207709 gacaaaaagcacagcaaatccgttcctaagttcttctctct 27207669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 385
Target Start/End: Complemental strand, 23168483 - 23168249
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa--- 249  Q
    |||||||||||||||||||| ||||||| | || ||||   ||||| ||| ||||| ||||||||||||||||||| ||| |  || |||||| |||       
T  23168483 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctcaattt 23168384  T
Q  250 ttttacctttaagaacagttcaatt-gattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagac 347  Q
    ||||| ||| || |||  ||| ||| |||||| ||||||||| ||||| |||||||  | |||||||  |||||||||||||||||||||||||| | ||    
T  23168383 ttttatcttcaa-aactattctattagattaatttttcagaaattatacattatgatcaatgaaaga-taatcccacccttaccttagaattgcagaaac 23168286  T
Q  348 aaatagcacaataaatcagttcctaagttcttttctct 385  Q
    ||| ||||||  ||| | || ||||||||||| |||||    
T  23168285 aaa-agcacagcaaaaccgtccctaagttcttctctct 23168249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 385
Target Start/End: Complemental strand, 23579740 - 23579506
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa--- 249  Q
    |||||||||||||||||||| ||||||| | || ||||   ||||| ||| ||||| ||||||||||||||||||| ||| |  || |||||| |||       
T  23579740 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaaatcagcatcataccctaattctcaattt 23579641  T
Q  250 ttttacctttaagaacagttcaatt-gattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagac 347  Q
    ||||| ||| || |||  ||| ||| |||||| ||||||||| ||||| |||||||  | |||||||  |||||||||||||||||||||||||| | ||    
T  23579640 ttttatcttcaa-aactattctattagattaatttttcagaaattatacattatgatcaatgaaaga-taatcccacccttaccttagaattgcagaaac 23579543  T
Q  348 aaatagcacaataaatcagttcctaagttcttttctct 385  Q
    ||| ||||||  ||| | || ||||||||||| |||||    
T  23579542 aaa-agcacagcaaaaccgtccctaagttcttctctct 23579506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 23265057 - 23265174
Alignment:
Q  194 taaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-ttttacctttaagaacagttcaatt-gattaattttcagaagt 291  Q
    ||||| ||||||||| ||| || |||||||||||| ||| ||||| |||||| ||| |||||  || ||||||| ||||||| ||| ||||||||||| |    
T  23265057 taaacatgattcttacaccattcctttcaaaatcagcatcaaccc-taattctcaatttttattttcaagaacaattcaattagatcaattttcagaaat 23265155  T
Q  292 tatatattatgactattga 310  Q
    |||||| ||||| ||||||    
T  23265156 tatatactatgattattga 23265174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 23280125 - 23280242
Alignment:
Q  194 taaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-ttttacctttaagaacagttcaatt-gattaattttcagaagt 291  Q
    ||||| ||||||||| ||| || |||||||||||| ||| ||||| |||||| ||| |||||  || ||||||| ||||||| ||| ||||||||||| |    
T  23280125 taaacatgattcttacaccattcctttcaaaatcagcatcaaccc-taattctcaatttttattttcaagaacaattcaattagatcaattttcagaaat 23280223  T
Q  292 tatatattatgactattga 310  Q
    |||||| ||||| ||||||    
T  23280224 tatatactatgattattga 23280242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 27366567 - 27366533
Alignment:
Q  316 aaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||| |||||||||||||||||||||||||||||    
T  27366567 aaatctcacccttaccttagaattgcaaagacaaa 27366533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 79773 - 79439
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  79773 catcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 79674  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaa 249  Q
    |||| ||||||||||||||||||| |||   | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  79673 acatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaa 79574  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  79573 ttttacc-ttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 79476  T
Q  350 atagcaca-ataaatcagttcctaagttcttttctct 385  Q
    ||||||||   |||||||||||||||||||| |||||    
T  79475 atagcacagcaaaatcagttcctaagttcttctctct 79439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 50254 - 49919
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  50254 catcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 50155  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaa 249  Q
    |||| ||||||||||||||||||| | |   | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  50154 acatggattaagaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaa 50055  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||  | |||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  50054 tttttaccttaagaacagtttaattgattaatttttagaaattacatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 49956  T
Q  350 atagcacaa-taaatcagttcctaagttcttttctct 385  Q
    |||||||||  |||||||||||||||||||| |||||    
T  49955 atagcacaacaaaatcagttcctaagttcttctctct 49919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 19236673 - 19237005
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    ||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||||    
T  19236673 catcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatactctattttcattccaattacgatcagcatcaaca 19236772  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttcccaa 249  Q
    ||||||||||||||  |||||||||| ||| |||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||    
T  19236773 acatagattaagaacacatactaaac-tcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaa 19236871  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  19236872 ttttacc-ttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 19236969  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  |||||||||||||||||||| |||||    
T  19236970 aaagcacagcaaatcagttcctaagttcttctctct 19237005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 22460928 - 22461261
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  22460928 catcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaaca 22461027  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttcccaa 249  Q
    ||||||| ||||||| |||||||||||||| ||||  ||| |||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||||    
T  22461028 acatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttc-aaatcatccttaaccctaaatttcccaa 22461126  T
Q  250 ttttacctttaagaacagttcaattgattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagaca 348  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  22461127 ttttacc-ttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagaca 22461224  T
Q  349 aatagcacaataaatcagttcctaagttcttttctct 385  Q
    ||  |||||  |||||||||| ||||||||| |||||    
T  22461225 aaaggcacagcaaatcagttcttaagttcttctctct 22461261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 22467552 - 22467885
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    |||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  22467552 catcaacaacatcaattctattcattcaagaattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagcatcaaca 22467651  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttcccaa 249  Q
    ||||||| ||||||| |||||||||||||| ||||  ||| |||||||||||| ||||||||||||||||| |||||||| |||||||| || |||||||    
T  22467652 acatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttc-aaatcatccttaaccctaaatttcccaa 22467750  T
Q  250 ttttacctttaagaacagttcaattgattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagaca 348  Q
    ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  22467751 ttttacc-ttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagaca 22467848  T
Q  349 aatagcacaataaatcagttcctaagttcttttctct 385  Q
    ||  |||||  |||||||||| ||||||||| |||||    
T  22467849 aaaggcacagcaaatcagttcttaagttcttctctct 22467885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 52 - 346
Target Start/End: Original strand, 20772743 - 20773035
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    ||||||||||||||||| |  ||| |||| ||||||| || | ||||||||| ||||||||| |||||||| |||||| |||||||  ||||||||||||    
T  20772743 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctactttcat-ccaattatgatcaacatcaac 20772841  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttccca 248  Q
    || ||||| || ||||||||||||| ||||| | || |||||||||||||||||||||| || ||||||| ||||||||||||||||||| || ||||||    
T  20772842 aatatagagtaggaaatcatactaatcatcaaa-tacaacattataaacctgattcttacacattttctt-caaaatcatcattaaccctaaatttccca 20772939  T
Q  249 attttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    |||||||| |||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  20772940 attttacc-ttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaaga-taatcccacccttaccttagaattgcaaaga 20773035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 52 - 346
Target Start/End: Original strand, 20781518 - 20781810
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    ||||||||||||||||| |  ||| |||| ||||||| || | ||||||||| ||||||||| |||||||| |||||| |||||||  ||||||||||||    
T  20781518 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctactttcat-ccaattatgatcaacatcaac 20781616  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttccca 248  Q
    || ||||| || ||||||||| ||| ||||| | || |||||||||||||||||||||| || ||||||| ||||||||||||||||||| || ||||||    
T  20781617 aatatagagtaggaaatcataataatcatcaaa-tacaacattataaacctgattcttacacattttctt-caaaatcatcattaaccctaaatttccca 20781714  T
Q  249 attttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    |||||||| |||||||||||| ||||||||||||||||||| | ||||||||| | ||||||||||  ||||||||||||||||||||||||||||||    
T  20781715 attttacc-ttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaaga-taatcccacccttaccttagaattgcaaaga 20781810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 52 - 346
Target Start/End: Complemental strand, 24930211 - 24929917
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaa-ttacaatcaacatcaac 149  Q
    ||||||||||||||||| |  ||| |||| ||||||| || | ||||||| ||||||| ||||||||||||||||| ||||| |||  ||||| ||||||    
T  24930211 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaacattcatctatcatattctattttcactccaaattatgatcaatatcaac 24930112  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-ccca 248  Q
    |  |||||||| ||||||||||||| ||||| | || |||||||||||||||||||||| || ||| ||| || |||||||||||||||| |||| ||||    
T  24930111 attatagattaggaaatcatactaatcatcaaa-tacaacattataaacctgattcttacacatttcctt-cagaatcatcattaaccctaaatttccca 24930014  T
Q  249 attttacctttaagaacagttcaattgattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    |||||||||| |||||||||| |||||||||| |||| |||| | ||||||||  ||||||||||||  |||||||||||||||||||||||| |||||    
T  24930013 attttacctt-aagaacagttaaattgattaattttttagaaatcatatattagaactattgaaaga-taatcccacccttaccttagaattgtaaaga 24929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 20820126 - 20820279
Alignment:
Q  187 aacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaattgattaattttca 286  Q
    |||||||||||||||| |||||| | || |||| ||||||||||||||||||| | || ||||||||||| |||||||| ||| ||||  |||||  |||    
T  20820126 aacattataaacctgaatcttatgcattctctt-caaaatcatcattaaccctaattttccaattttacc-ttaagaacggttgaattacttaatcatca 20820223  T
Q  287 gaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaa 343  Q
    ||| ||||||||||  ||||||||||||   ||||||||||||||||||||||||||    
T  20820224 gaaattatatattaacactattgaaaga-tgatcccacccttaccttagaattgcaa 20820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 20827226 - 20827379
Alignment:
Q  187 aacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaattgattaattttca 286  Q
    |||||||||||||||| |||||| | || |||| ||||||||||||||||||| | || ||||||||||| |||||||| ||| ||||  |||||  |||    
T  20827226 aacattataaacctgaatcttatgcattctctt-caaaatcatcattaaccctaattttccaattttacc-ttaagaacggttgaattacttaatcatca 20827323  T
Q  287 gaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaa 343  Q
    ||| ||||||||||  ||||||||||||   ||||||||||||||||||||||||||    
T  20827324 gaaattatatattaacactattgaaaga-tgatcccacccttaccttagaattgcaa 20827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 385
Target Start/End: Complemental strand, 28909566 - 28909240
Alignment:
Q  56 aacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacat 154  Q
    |||||||||||| ||||||| ||| ||||||||||| |   ||| |||||||| ||| | || || ||||||| |||||||  ||||||| || | | |     
T  28909566 aacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcat-ccaattatgatcaacaacagcgatac 28909468  T
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaatttt 253  Q
    |||||| ||||||||||||| ||| | | || ||| | |||||||||| | |||  | ||||| |||||||||||||| || ||| |  |||||||||||    
T  28909467 agattaggaaatcatactaatcatta-aatacaacgtcataaacctgaattttacgcattttc-ttcaaaatcatcatcaaacctaattttcccaatttt 28909370  T
Q  254 acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatag 353  Q
      | ||||||||| || ||| | ||||||||||||| | ||||| ||| ||||||||||||   |||||||||||||||||||||||||| |||||| ||    
T  28909369 taccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaaga-tgatcccacccttaccttagaattgcaacgacaaa-ag 28909272  T
Q  354 cacaataaatcagttcctaagttcttttctct 385  Q
    ||||  |||||| |||||| |||||| |||||    
T  28909271 cacagcaaatcaattcctaggttcttctctct 28909240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 385
Target Start/End: Complemental strand, 28945961 - 28945635
Alignment:
Q  56 aacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacat 154  Q
    |||||||||||| ||||||| ||| ||||||||||| |   ||| |||||||| ||| | || || ||||||| |||||||  ||||||| || | | |     
T  28945961 aacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcat-ccaattatgatcaacaacagcgatac 28945863  T
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaatttt 253  Q
    |||||| ||||||||||||| ||| | | || ||| | |||||||||| | |||  | ||||| |||||||||||||| || ||| |  |||||||||||    
T  28945862 agattaggaaatcatactaatcatta-aatacaacgtcataaacctgaattttacgcattttc-ttcaaaatcatcatcaaacctaattttcccaatttt 28945765  T
Q  254 acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatag 353  Q
      | ||||||||| || ||| | ||||||||||||| | ||||| ||| ||||||||||||   |||||||||||||||||||||||||| |||||| ||    
T  28945764 taccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaaga-tgatcccacccttaccttagaattgcaacgacaaa-ag 28945667  T
Q  354 cacaataaatcagttcctaagttcttttctct 385  Q
    ||||  |||||| |||||| |||||| |||||    
T  28945666 cacagcaaatcaattcctaggttcttctctct 28945635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 385
Target Start/End: Complemental strand, 28896318 - 28895992
Alignment:
Q  56 aacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacat 154  Q
    |||||||||||| ||||||| ||| ||||||||||| |   ||| |||||||| ||| | || || ||||||| |||||||  ||||||| || | | |     
T  28896318 aacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcat-ccaattatgatcaacaacagcgatac 28896220  T
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaatttt 253  Q
    |||||| ||||||||||||| ||| | | || ||| | |||||||||| | |||  | ||||| |||||||||||||| || ||| |  |||||||||||    
T  28896219 agattaggaaatcatactaatcatta-aatacaacgtcataaacctgaattttacgcattttc-ttcaaaatcatcatcaaacctaattttcccaatttt 28896122  T
Q  254 acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatag 353  Q
      | ||||||||| || ||| | ||||||||||||| | ||||| ||| ||||||||||||   |||||||||||||||||||||||||| | |||| ||    
T  28896121 taccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaaga-tgatcccacccttaccttagaattgcaacggcaaa-ag 28896024  T
Q  354 cacaataaatcagttcctaagttcttttctct 385  Q
    ||||  |||||| |||||| |||||| |||||    
T  28896023 cacagcaaatcaattcctaggttcttctctct 28895992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 385
Target Start/End: Complemental strand, 28925144 - 28924818
Alignment:
Q  56 aacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacat 154  Q
    |||||||||||| ||||||| ||| ||||||||||| |   ||| |||||||| ||| | || || ||||||| |||||||  ||||||| || | | |     
T  28925144 aacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcat-ccaattatgatcaacaacagcgatac 28925046  T
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaatttt 253  Q
    |||||| ||||||||||||| ||| | | || ||| | |||||||||| | |||  | ||||| |||||||||||||| || ||| |  |||||||||||    
T  28925045 agattaggaaatcatactaatcatta-aatacaacgtcataaacctgaattttacgcattttc-ttcaaaatcatcatcaaacctaattttcccaatttt 28924948  T
Q  254 acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatag 353  Q
      | ||||||||| || ||| | ||||||||||||| | ||||| ||| ||||||||||||   |||||||||||||||||||||||||| | |||| ||    
T  28924947 taccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaaga-tgatcccacccttaccttagaattgcaacggcaaa-ag 28924850  T
Q  354 cacaataaatcagttcctaagttcttttctct 385  Q
    ||||  |||||| |||||| |||||| |||||    
T  28924849 cacagcaaatcaattcctaggttcttctctct 28924818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 343
Target Start/End: Complemental strand, 28889614 - 28889329
Alignment:
Q  56 aacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacat 154  Q
    |||||||||||| ||||||| ||| ||||||||||| |   ||| |||||||| ||| | || || ||||||| |||||||  ||||||| || | | |     
T  28889614 aacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcat-ccaattatgatcaacaacagcgatac 28889516  T
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attcccaatttt 253  Q
    |||||| ||||||||||||| ||| | | || ||| | |||||||||| | |||  | ||||| |||||||||||||| || ||| |  |||||||||||    
T  28889515 agattaggaaatcatactaatcatta-aatacaacgtcataaacctgaattttacgcattttc-ttcaaaatcatcatcaaacctaattttcccaatttt 28889418  T
Q  254 acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaa 343  Q
      | ||||||||| || ||| | ||||||||||||| | ||||| ||| ||||||||||||   ||||||||||||||||||||||||||    
T  28889417 taccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaaga-tgatcccacccttaccttagaattgcaa 28889329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 342
Target Start/End: Original strand, 34829960 - 34830146
Alignment:
Q  154 tagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaatttt 253  Q
    ||||||||||||||||||| | ||||| | || ||||   ||||| ||||||||| | |||| |||||||||||| ||| |  || |||||| |||||||    
T  34829960 tagattaagaaatcatactgatcatcaaattacaacacattaaacatgattcttacatcttt-ctttcaaaatcagcatcataccctaattctcaatttt 34830058  T
Q  254 acctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgca 342  Q
    | ||| ||||||  ||| ||| |||| |||||||||| ||||| ||||  | |||||||||| || ||||||||||||||||||||||||    
T  34830059 atcttcaagaactattctattagattgattttcagaaattatacattaa-attattgaaagataa-tcccacccttaccttagaattgca 34830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 310
Target Start/End: Complemental strand, 18408125 - 18407967
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattt 252  Q
    ||||||||||||||||| || ||||| | |   |||||   ||||| ||||||||| ||| || |||||||||||| ||| |||||| ||||||||||||    
T  18408125 atagattaagaaatcattctgaacatgaaaactaaacacattaaacatgattcttacaccattcctttcaaaatcagcatcaaccct-aattcccaattt 18408027  T
Q  253 taccttt-aagaacagttcaatt-gattaattttcagaagttatatattatgactattga 310  Q
    |   ||| ||||||| ||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  18408026 ttattttcaagaacaattcaattagatcaattttcagaaattatatattatgattattga 18407967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 23111340 - 23111223
Alignment:
Q  194 taaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttaccttt-aagaacagttcaatt-gattaattttcagaagt 291  Q
    ||||| ||||||||| ||| |  |||||||||||| ||| |||||| |||||||||||||   ||| ||||||| ||||||| ||| ||||||||||| |    
T  23111340 taaacatgattcttacaccatccctttcaaaatcagcatcaaccct-aattcccaatttttattttcaagaacaattcaattagatcaattttcagaaat 23111242  T
Q  292 tatatattatgactattga 310  Q
    |||||| ||||| ||||||    
T  23111241 tatatactatgattattga 23111223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 23111482 - 23111442
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaa 92  Q
    |||||||||||||||||||| |||||| |||| ||||||||    
T  23111482 catcaacaacaacaattcagaccattctagcaatcatacaa 23111442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 52 - 373
Target Start/End: Complemental strand, 16147113 - 16146791
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  16147113 catcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 16147014  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa- 249  Q
    |||| ||||||||||||||||||| |||   | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||     
T  16147013 acatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaa 16146914  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  16146913 ttttacctt-aagaacagtttaattgattaattttcagaaattacatattatgactattgaaaga-taatcccacccttaccttagaattgcaaagacaa 16146816  T
Q  350 atagcaca-ataaatcagttcctaa 373  Q
    ||||||||   ||||||||||||||    
T  16146815 atagcacagcaaaatcagttcctaa 16146791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 153 - 342
Target Start/End: Original strand, 27906139 - 27906328
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattt 252  Q
    |||||||||||||||||||  ||||||| | || ||||   ||||| ||||||||| ||||||||||||||||||| ||| |  || |||||| ||||||    
T  27906139 atagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaaatcaacatcacaccctaattctcaattt 27906238  T
Q  253 tacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgca 342  Q
    || ||| ||||||  ||| |||  |||||||||||||| ||||| |||||||  |||||||||  ||||||||||||| ||||||||||||    
T  27906239 tatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaaga-taatcccacccttatcttagaattgca 27906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 14486601 - 14486685
Alignment:
Q  220 tcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatattatga 303  Q
    ||||||||||||| ||||||  ||||||||||||| ||| ||||||| ||||||| ||||||||||||||| |||||||||||||    
T  14486601 tcaaaatcatcatcaaccctatattcccaattttatcttcaagaacaattcaattcgattaattttcagaaattatatattatga 14486685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 15408012 - 15408112
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattt 252  Q
    ||||||||||||||||| || ||||||| | || ||||   ||||| |||| |||| ||| || ||| |||||||| ||| |||||| | ||||||||||    
T  15408012 atagattaagaaatcattctgaacatcaaattacaacacattaaacatgatccttaaaccattccttccaaaatcagcatcaaccctaatttcccaattt 15408111  T
Q  253 t 253  Q
    |    
T  15408112 t 15408112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 52 - 340
Target Start/End: Original strand, 9109 - 9396
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||| || ||||||||||||||||||||||| ||||||||   ||||  |||||||    
T  9109 catcaacaacaacaattcagcccattcaagcaatcatacaaaacttcccaa-ttcatccatcatattctattttcgttccaattctgatcacaatcaaca 9207  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaat 250  Q
    ||||||||| |||||||||||||||||||| | || ||||  |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9208 acatagattgagaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaattcccaat 9307  T
Q  251 tttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattg 340  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  9308 tttacttttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaaga-taatcccacccttaccttagaattg 9396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 20008230 - 20007897
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||| ||||||    ||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  20008230 catcaacaacatcaattctattcattcaagcattcatgcaaggcttctaaaattcattcatcatattctattttcattccaattacgatcagcatcaaca 20008131  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaa 249  Q
    | ||||||||||||| |||||||||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||    
T  20008130 atatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaa 20008031  T
Q  250 ttttacctttaagaacagttcaattgattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagaca 348  Q
    ||||||||| ||||||||||||||||||||| |||||| || ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  20008030 ttttacctt-aagaacagttcaattgattaatttttcataaattatatattatgactattgaaaga-tgatcccacccttaccttagaattgcaaagaca 20007933  T
Q  349 aatagcacaataaatcagttcctaagttcttttctct 385  Q
    || ||||||  |||| ||||||||||||||| |||||    
T  20007932 aa-agcacagcaaatgagttcctaagttcttctctct 20007897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 52 - 346
Target Start/End: Complemental strand, 9099354 - 9099060
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattcc-aattacaatcaacatcaac 149  Q
    ||||||||||||||||| |  ||| |||| ||||||| || | ||||||||||||||| ||||||||||||||||| ||| |||||  ||||| ||||||    
T  9099354 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatcaac 9099255  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaa-ttccca 248  Q
    || |||||||| ||||||||||||| ||||| | || |||||||||||||||||||||| || ||||| |||| |||||||||||||||| || ||||||    
T  9099254 aatatagattaggaaatcatactaatcatca-aatacaacattataaacctgattcttacacattttc-ttcagaatcatcattaaccctaaatttccca 9099157  T
Q  249 attttacctttaagaacagttcaattgattaa-ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    |||||||| |||||||||||| |||||||||| ||||||||| | ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  9099156 attttacc-ttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaaga-taatcccacccttaccttagaattgcaaaga 9099060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 21364761 - 21364433
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    |||||||||||||||||||  | | |||| ||||||| || | ||| ||||| ||||||||| ||||||||  ||||| |||||||  ||||||||||||    
T  21364761 catcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcat-ccaattatgatcaacatcaac 21364663  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa 249  Q
    || | ||| || ||||||||| ||| ||||| | || |||||||||||||| | ||||| |  |||||||  |||||   |||||||||| | |||||||    
T  21364662 aatacagagtaggaaatcatattaatcatcaaa-tacaacattataaacctaagtcttacatattttcttcaaaaatgc-cattaaccctaatttcccaa 21364565  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| | ||  |||||| ||||| ||||||||||||| | ||||||||| | || |||| || || ||||||||||||||| |||||||||||||||    
T  21364564 ttttaccataaa--acagttaaattgcttaattttcagaaatcatatattatcattactgaaggataa-tcccacccttacctttgaattgcaaagacaa 21364468  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  ||| || |||||| |||||| |||||    
T  21364467 a-agcacagcaaaacaattcctaggttcttctctct 21364433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 52 - 385
Target Start/End: Complemental strand, 23968743 - 23968415
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    |||||||||||||||||||  | | |||| ||||||| || | ||| ||||| ||||||||| ||||||||  ||||| |||||||  ||||||||||||    
T  23968743 catcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcat-ccaattatgatcaacatcaac 23968645  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa 249  Q
    || | ||| || ||||||||| ||| ||||| | || |||||||||||||| | ||||| |  |||||||  |||||   |||||||||| | |||||||    
T  23968644 aatacagagtaggaaatcatattaatcatcaaa-tacaacattataaacctaagtcttacatattttcttcaaaaatgc-cattaaccctaatttcccaa 23968547  T
Q  250 ttttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaa 349  Q
    ||||||| | ||  |||||| ||||| ||||||||||||| | ||||||||| | || |||| || || ||||||||||||||| |||||||||||||||    
T  23968546 ttttaccataaa--acagttaaattgcttaattttcagaaatcatatattatcattactgaaggataa-tcccacccttacctttgaattgcaaagacaa 23968450  T
Q  350 atagcacaataaatcagttcctaagttcttttctct 385  Q
    | ||||||  ||| || |||||| |||||| |||||    
T  23968449 a-agcacagcaaaacaattcctaggttcttctctct 23968415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 350
Target Start/End: Original strand, 31252299 - 31252493
Alignment:
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaatttta 254  Q
    |||||||||||||||||  | ||||| | || ||||   ||||| | ||||||| |||||| |||||||||||| | | |  || |||||| ||||||||    
T  31252299 agattaagaaatcatacatagcatcaaattacaacacgttaaacataattcttacaccttt-ctttcaaaatcagcctcataccctaattctcaatttta 31252397  T
Q  255 cctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
     ||| ||||||  ||||||| ||||||||||||||| ||||||||||| |  ||| ||||| || || |||||||||||||||||||||||||||||    
T  31252398 tcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataa-tctcacccttaccttagaattgcaaagacaaa 31252493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 15458492 - 15458560
Alignment:
Q  281 ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||||||| ||||||||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 15458560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 15465087 - 15465155
Alignment:
Q  281 ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||||||| ||||||||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 15465155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 202
Target Start/End: Original strand, 29097637 - 29097789
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttca-ttccaattacaatcaacatcaa 148  Q
    ||||||||||||||||| |  ||| |||| ||||||| || | ||||||||| |||||| || |||||||||||||| ||| |||||  ||||| |||||    
T  29097637 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaaattcatctattatattctattttcacttcaaattatgatcaatatcaa 29097736  T
Q  149 caacatagattaagaaatcatactaaacatcacagtaaaacattataaacctga 202  Q
    ||  |||||||| ||||||||||||| ||||| | || |||| |||||||||||    
T  29097737 cattatagattaggaaatcatactaatcatca-aatacaacagtataaacctga 29097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 11288721 - 11288653
Alignment:
Q  281 ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||||||| |||||||||| ||  ||||||||| || ||||||||||||||||||||||| ||||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataa-tcccacccttaccttagaattgccaagacaaa 11288653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 24563474 - 24563508
Alignment:
Q  316 aaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||| |||||||||||||||||||||||||||||    
T  24563474 aaatctcacccttaccttagaattgcaaagacaaa 24563508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 350
Target Start/End: Complemental strand, 28288522 - 28288494
Alignment:
Q  322 cacccttaccttagaattgcaaagacaaa 350  Q
    |||||||||||||||||||||||||||||    
T  28288522 cacccttaccttagaattgcaaagacaaa 28288494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 193 - 385
Target Start/End: Complemental strand, 2053 - 1862
Alignment:
Q  193 ataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaattgattaattttcagaagtt 292  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||    
T  2053 ataaacctaattcttacaccttttctttcaaaatcatcattaacccttaattcccaattttactttcaagaacagttcaattgattaattttcagaaatt 1954  T
Q  293 atatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatagcacaataaatcagttcctaagttcttttctct 385  Q
    ||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||  ||||| |||||||||||||| |||||    
T  1953 atatattatgactattgaaaga-taatcccacccttaccttacaattgcaaagacaaaaagcacagcaaatccgttcctaagttcttctctct 1862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 52 - 350
Target Start/End: Original strand, 1130 - 1425
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatac--aagcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    |||||||||||||||||||||||| ||||||||||||||  || ||||| |||||||  ||| | || ||||||||| ||||||||  ||||||| ||||    
T  1130 catcaacaacaacaattcagcccaatcaagcattcatacagaaacttcc-aaattcacacataacatgctattttca-tccaattatgatcaacaacaac 1227  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta-attccca 248  Q
    || | |||||| ||||||||||||| ||||| | || |||||| ||||||||| |||||  | ||||| ||||||||||||||||  ||| |  ||||||    
T  1228 aatacagattaggaaatcatactaatcatca-attataacattgtaaacctgaatcttacgcattttc-ttcaaaatcatcattagacctaattttccca 1325  T
Q  249 attttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagaca 348  Q
    |||||||| |||||||||||| ||||| |||||||||||||   ||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  1326 attttacc-ttaagaacagttaaattgtttaattttcagaaagcatatattaacactattgaaag-gaaatcccacccttaccttagaattgcaaagaca 1423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 94 - 340
Target Start/End: Complemental strand, 16303 - 16059
Alignment:
Q  94 cttccaaaattcatccatcatattctatttt-cattccaattacaatcaacatcaacaacatagattaagaaatcatactaaacatcacagtaaaacatt 192  Q
    ||||||||| || || ||||||||||||||| || | ||||||  ||||| || ||||| ||||||||  |||||||||||| ||||| | || |||||     
T  16303 cttccaaaactcttctatcatattctatttttcacttcaattatgatcaatatgaacaatatagattagaaaatcatactaatcatcaaa-tacaacatc 16205  T
Q  193 ataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaattgattaatttt-cagaagt 291  Q
    || ||||||||||||  || ||||||| ||||||||||||||||||| |||||| | ||||| ||| || ||||||| |||||||||||||| ||||| |    
T  16204 atgaacctgattcttgcacattttctt-caaaatcatcattaaccctaaattccaatttttatcttaaa-aacagttaaattgattaatttttcagaaat 16107  T
Q  292 tatatattatgactattgaaagagaaatcccacccttaccttagaattg 340  Q
     ||||||||| |||||||||||| || ||||||||||||||||||||||    
T  16106 catatattataactattgaaagataa-tcccacccttaccttagaattg 16059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 385
Target Start/End: Original strand, 776 - 1101
Alignment:
Q  56 aacaacaacaattcagcccattcaagcattcataca-agcttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaacaacat 154  Q
    |||||||||||| ||||||| ||||||||| ||||| |   ||| |||||||| ||| | || |||||||||| |||||||  ||||||| |||||  ||    
T  776 aacaacaacaatccagcccaatcaagcattaatacagaaaatcccaaattcatacataacatgctattttcat-ccaattatgatcaacaacaacattat 874  T
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaatttt 253  Q
    ||||    || || |||||| ||||| |  | ||| |||||||||| | ||||| || ||||||| |||||||  |||||||||| | || |||||||||    
T  875 agatcggaaactcttactaatcatcaaac-acaactttataaacctaaatcttacacattttctt-caaaatcgccattaaccctaattttcccaatttt 972  T
Q  254 acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatag 353  Q
    ||| | |||||||||| ||||| ||||||||||||| | ||||||||| |||||||| |||  | |||||||||||||||||||||||||||||||| ||    
T  973 accat-aagaacagttaaattgcttaattttcagaaatcatatattatcactattgagagatga-tcccacccttaccttagaattgcaaagacaaa-ag 1069  T
Q  354 cacaataaatcagttcctaagttcttttctct 385  Q
    ||||  |||||| |||||| |||||| |||||    
T  1070 cacagcaaatcaattcctaggttcttctctct 1101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 153 - 385
Target Start/End: Original strand, 10115 - 10344
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaa-acattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaatt 251  Q
    ||||||||||||||||| |||||||  | | |||| ||||||  ||| ||||||||| ||| |  |||||||||| | ||| |||||| |||||||||||    
T  10115 atagattaagaaatcattctaaacactaaactaaacacatta--aacatgattcttacaccatccctttcaaaattagcatcaaccct-aattcccaatt 10211  T
Q  252 ttacctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaat 351  Q
    |||   | | ||||| |||||||||||||||||||||| ||| ||||||||| ||||| |||| || || ||||||||||||||||||| | |||||||     
T  10212 ttattctcatgaacaattcaattgattaattttcagaaattacatattatgattattggaagataa-tctcacccttaccttagaattgtagagacaaaa 10310  T
Q  352 agcacaataaatcagttcctaagttcttttctct 385  Q
    ||||||  ||||| |||||||||||||| |||||    
T  10311 agcacagcaaatccgttcctaagttcttctctct 10344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 155 - 350
Target Start/End: Complemental strand, 6036 - 5842
Alignment:
Q  155 agattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaatttta 254  Q
    |||||||||||||||||  ||||||| | || |||||  ||||| | ||||||| |||||| |||||||||||| | | |  || |||||| ||||||||    
T  6036 agattaagaaatcatacataacatcaaattacaacatgttaaacataattcttacaccttt-ctttcaaaatcagcctcataccctaattctcaatttta 5938  T
Q  255 cctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
     ||| ||||||  ||||||| ||||||||||||||| ||||||||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  5937 tcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 5842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 200 - 385
Target Start/End: Complemental strand, 493162 - 492978
Alignment:
Q  200 tgattcttataccttttctttcaaaatcatcattaacccttaattcccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatat 298  Q
    ||||||||| ||||||||||||||||||| |||||  || |||||| | |||||| ||  ||||||  ||| ||| ||||||||||||||| ||||| ||    
T  493162 tgattcttacaccttttctttcaaaatcagcattataccctaattctctattttatctccaagaactattccattagattaattttcagaaattatacat 493063  T
Q  299 tatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatagcacaataaatcagttcctaagttcttttctct 385  Q
    || || |||||||||| || || ||||||||||||||||||||| ||||||| ||||||  ||||| |||||||||||||| |||||    
T  493062 ta-gattattgaaagataa-tctcacccttaccttagaattgcagagacaaaaagcacagcaaatccgttcctaagttcttctctct 492978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 346
Target Start/End: Complemental strand, 91485 - 91191
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    |||||||||||||||||||  | | |||| ||||||| || | ||| ||||| ||||||||| ||||||||  ||||| |||||||  |||||||||| |    
T  91485 catcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcat-ccaattatgatcaacatcacc 91387  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa 249  Q
    || | ||| || ||||||||| ||| ||||| | || |||||||||||||| | ||||| || ||||||| ||||||   |||||||||| | |||||||    
T  91386 aatacagagtaggaaatcatattaatcatcaaa-tacaacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaatttcccaa 91289  T
Q  250 tttt---acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    ||||   ||| | || ||||||| ||||| ||||||||||||| | ||||||||| | ||||||||||  | ||||||||||||||||||||||||||||    
T  91288 tttttttaccataaa-aacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatga-tcccacccttaccttagaattgcaaaga 91191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 346
Target Start/End: Complemental strand, 97211 - 96917
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcataca-agcttccaaaa-ttcatccatcatattctattttcattccaattacaatcaacatcaac 149  Q
    |||||||||||||||||||  | | |||| ||||||| || | ||| ||||| ||||||||| ||||||||  ||||| |||||||  |||||||||| |    
T  97211 catcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcat-ccaattatgatcaacatcacc 97113  T
Q  150 aacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa 249  Q
    || | ||| || ||||||||| ||| ||||| | || |||||||||||||| | ||||| || ||||||| ||||||   |||||||||| | |||||||    
T  97112 aatacagagtaggaaatcatattaatcatcaaa-tacaacattataaacctaaatcttacacattttctt-caaaattgccattaaccctaatttcccaa 97015  T
Q  250 tttt---acctttaagaacagttcaattgattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    ||||   ||| | || ||||||| ||||| ||||||||||||| | ||||||||| | ||||||||||  | ||||||||||||||||||||||||||||    
T  97014 tttttttaccataaa-aacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatga-tcccacccttaccttagaattgcaaaga 96917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 153 - 342
Target Start/End: Complemental strand, 23751 - 23562
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattt 252  Q
    |||||||||||||||||||| ||||||| | || ||||   ||||| ||||||||| | ||||||||||||||||| ||| |  || |||||| ||||||    
T  23751 atagattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaaatcagcatcacaccctaattctcaattt 23652  T
Q  253 tacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgca 342  Q
    |  ||| ||||||  |||  || ||||||||||||||| ||||| |||||||  ||| |||||  ||||||||||||||||||||||||||    
T  23651 tgtcttcaagaactattcttttagattaattttcagaaattatacattatgatcattcaaaga-taatcccacccttaccttagaattgca 23562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 146 - 378
Target Start/End: Complemental strand, 3590 - 3359
Alignment:
Q  146 caacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattc 245  Q
    ||||| ||||||||||||||||||||  || |||| | || |||||  ||||| ||||||||| |||||| ||||||||||||   | |  || ||||||    
T  3590 caacatcatagattaagaaatcatacagaatatcaaattacaacatattaaacatgattcttacaccttt-ctttcaaaatcagtctcataccctaattc 3492  T
Q  246 ccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaa 344  Q
     |||||||| ||| ||||||  |||  || ||||||||||||||| ||||||||||     ||||||||| || |  |||||||||||||||||||||||    
T  3491 tcaattttatcttcaagaactattcttttagattaattttcagaaattatatattaaattcattgaaagataa-tatcacccttaccttagaattgcaaa 3393  T
Q  345 gacaaatagcacaataaatcagttcctaagttct 378  Q
    |||||| |||||   ||||| |||||||||||||    
T  3392 gacaaaaagcacggcaaatccgttcctaagttct 3359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 10250 - 10145
Alignment:
Q  279 aattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatagcacaataaatcagttcctaagttct 378  Q
    ||||||||||| ||||| ||||||| |||||| ||| |  |||||||||||||||||||||| | ||||||| ||||||  ||||| |||||||||||||    
T  10250 aattttcagaaattatagattatgattattgagagatag-tcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttct 10152  T
Q  379 tttctct 385  Q
    | |||||    
T  10151 tctctct 10145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 385
Target Start/End: Complemental strand, 1580 - 1475
Alignment:
Q  279 aattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaatagcacaataaatcagttcctaagttct 378  Q
    ||||||||||| ||||| ||||||| |||||| ||| |  |||||||||||||||||||||| | ||||||| ||||||  ||||| |||||||||||||    
T  1580 aattttcagaaattatagattatgattattgagagatag-tcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttct 1482  T
Q  379 tttctct 385  Q
    | |||||    
T  1481 tctctct 1475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 342
Target Start/End: Original strand, 73158 - 73347
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattt 252  Q
    |||||||||||||||||||  ||||||| | || ||||   ||||| ||||||||| ||| ||||||||||||||| ||| |  || |||||| ||||||    
T  73158 atagattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccgtttctttcaaaatcaacatcacaccctaattctcaattt 73257  T
Q  253 tacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgca 342  Q
    || ||| |||| |  | | ||| |||||||||||| || ||||| |||||||  |||||||||  |||||||||||||||| | |||||||    
T  73258 tatcttcaagagctatcctattagattaattttcataaattatacattatgatcattgaaaga-taatcccacccttacctcataattgca 73347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 153 - 339
Target Start/End: Complemental strand, 10731 - 10546
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaattt 252  Q
    |||||||||||||||||||  ||||||| | || |||    ||||| ||||||||| |||||| |||||||||||| | | |  || |||||| ||||||    
T  10731 atagattaagaaatcatacagaacatcaaattacaactcattaaacatgattcttacaccttt-ctttcaaaatcagcctcataccctaattctcaattt 10633  T
Q  253 tacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaatt 339  Q
    || ||| ||||||  ||| ||| ||||||||||||||| ||||| |||| ||  |||||||||  |||||||| ||||||||||||||    
T  10632 tatcttcaagaactattctattagattaattttcagaaattatacattaagatcattgaaaga-taatcccacacttaccttagaatt 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 13947 - 13879
Alignment:
Q  281 ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||||||| ||||||||||| |  ||||||||| || ||||||||||||||||||||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataa-tcccacccttaccttagaattgcaaagacaaa 13879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 16735 - 16852
Alignment:
Q  194 taaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-ttttacctttaagaacagttcaatt-gattaattttcagaagt 291  Q
    ||||| ||||||||| ||| || |||||||||||| ||| ||||| |||||||||| |||||  || ||||||| ||||||| ||| ||||||||||| |    
T  16735 taaacatgattcttaaaccattcctttcaaaatcagcatcaaccc-taattcccaatttttattttcaagaacaattcaattagatcaattttcagaaat 16833  T
Q  292 tatatattatgactattga 310  Q
    |||||| ||||| ||||||    
T  16834 tatatactatgattattga 16852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 6 - 70
Alignment:
Q  281 ttttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaaga 346  Q
    ||||||||| | ||||||||  |||||||||||| || ||||||||||||||||||||||||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataa-tcccacccttaccttagaattgcaaaga 70  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 34509 - 34359
Alignment:
Q  101 aattcatccatcatattctattttcattccaattacaatcaacatcaacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacct 200  Q
    |||| ||||| || |||||| |||||||||||||   |||| || |||||  ||||||||||||||||| || ||||||| | || ||||   ||||| |    
T  34509 aatttatccaacagattctaatttcattccaattctgatca-cagcaacattatagattaagaaatcattctgaacatcaaattacaacacattaaacat 34411  T
Q  201 gattcttataccttttctttcaaaatcatcattaacccttaattcccaatttt 253  Q
     ||||||| ||| || |||||||||||| ||| ||||| ||||||||||||||    
T  34410 aattcttacaccattcctttcaaaatcagcatcaaccc-taattcccaatttt 34359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 253
Target Start/End: Complemental strand, 40725 - 40614
Alignment:
Q  142 acatcaacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaaccctta 241  Q
    |||||||||  ||||||||||||||||| || ||||||| | || ||||   ||||| |||| |||| ||| || |||||||||||| ||| |||||| |    
T  40725 acatcaacattatagattaagaaatcattctgaacatcaaattacaacacgttaaacatgatccttacaccattcctttcaaaatcagcatcaaccctaa 40626  T
Q  242 attcccaatttt 253  Q
     |||||||||||    
T  40625 tttcccaatttt 40614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 13547 - 13664
Alignment:
Q  194 taaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-ttttacctttaagaacagttcaatt-gattaattttcagaagt 291  Q
    ||||| ||||||||| ||| || |||||||||||| ||| ||||| |||||||||| |||||  || ||||||| ||||||| ||| ||||||||||| |    
T  13547 taaacatgattcttacaccattcctttcaaaatcagcatcaaccc-taattcccaatttttattttcaagaacaattcaattagatcaattttcagaaat 13645  T
Q  292 tatatattatgactattga 310  Q
    ||| ||||| || ||||||    
T  13646 tatgtattaagattattga 13664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 3955 - 3921
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattc 86  Q
    |||||||||||||||||||||||||||||||||||    
T  3955 catcaacaacaacaattcagcccattcaagcattc 3921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 253
Target Start/End: Original strand, 135245 - 135446
Alignment:
Q  52 catcaacaacaacaattcagcccattcaagcattcatacaag-cttccaaaattcatccatcatattctattttcattccaattacaatcaacatcaaca 150  Q
    ||||||||||||||||||||  ||||| |||| ||||||||  ||||   ||||  |||| |  |||||| |||||||| ||||   |||| || |||||    
T  135245 catcaacaacaacaattcagatcattccagcaatcatacaaaacttctccaatttttccaaccgattctaatttcattcaaattctgatca-caacaaca 135343  T
Q  151 acatagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaat 250  Q
      ||||||||||||||||| || ||||||| | || ||||   ||||| |||| |||| ||| || |||||||||||| ||| |||||| | ||||||||    
T  135344 ttatagattaagaaatcattctgaacatcaaattacaacacattaaacatgatccttacaccattcctttcaaaatcagcatcaaccctaatttcccaat 135443  T
Q  251 ttt 253  Q
    |||    
T  135444 ttt 135446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1461 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 334
Target Start/End: Complemental strand, 1592 - 1485
Alignment:
Q  226 tcatcattaacccttaattcccaattttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattgaaagagaaatcccac 324  Q
    ||||||||||||||||||||||||||||| ||||| |||||   ||||| ||||||||||||||| ||  |||||| ||  |||| ||||  |||| |||    
T  1592 tcatcattaacccttaattcccaattttatctttatgaaca-accaattagattaattttcagaaattgcatattaagatcattgcaaga-taatctcac 1495  T
Q  325 ccttacctta 334  Q
    ||||||||||    
T  1494 ccttacctta 1485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 269
Target Start/End: Original strand, 12815 - 12951
Alignment:
Q  138 atcaacatcaacaacatagattaagaaatcatactaaacatcacagtaaaacattataaacct-gattcttataccttttctttcaaaatcat-cattaa 235  Q
    ||||| |||||||  |||||||| ||||||||||||| |||   | || |||||||||||||| ||||||||   | |||| |||| |||||| ||||||    
T  12815 atcaatatcaacattatagattaggaaatcatactaatcatacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaa 12914  T
Q  236 cccttaatt--cccaa-ttttacctttaagaacagtt 269  Q
    |||| ||||  ||||| ||||||||||||||||||||    
T  12915 ccctaaatttccccaatttttacctttaagaacagtt 12951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 310
Target Start/End: Complemental strand, 189 - 31
Alignment:
Q  153 atagattaagaaatcatactaaacatcacagtaaaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-tt 251  Q
    ||||||||||||||||| || ||||  | | ||||||    ||||| ||||||||| ||| || |||||||||||| ||  ||||| |||||||||| ||    
T  189 atagattaagaaatcattctgaacactaaattaaaactcattaaacatgattcttacaccattcctttcaaaatcagcaacaaccc-taattcccaattt 91  T
Q  252 ttacctttaagaacagttcaatt-gattaattttcagaagttatatattatgactattga 310  Q
    |||  || ||||||| ||||||| ||| ||||||||||| |||| ||||| || ||||||    
T  90 ttattttcaagaacaattcaattagatcaattttcagaaattatgtattaagattattga 31  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 111686 - 111756
Alignment:
Q  279 aattttcagaagttatatattatgactattgaaagagaaatcccacccttaccttagaattgcaaagacaaa 350  Q
    ||||||||||| ||||| ||||||| |||||| ||| |  || |||||||||||||||||||| ||||||||    
T  111686 aattttcagaaattatagattatgattattgagagatag-tctcacccttaccttagaattgcgaagacaaa 111756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 116811 - 116928
Alignment:
Q  194 taaacctgattcttataccttttctttcaaaatcatcattaacccttaattcccaa-ttttacctttaagaacagttcaatt-gattaattttcagaagt 291  Q
    ||||| ||||||||| ||| || |||||||||||| ||| ||||| ||||||  || |||||  || ||||||| ||||||| ||| ||||||||||| |    
T  116811 taaacatgattcttacaccattcctttcaaaatcagcatcaaccc-taattctaaatttttattttcaagaacaattcaattagatcaattttcagaaat 116909  T
Q  292 tatatattatgactattga 310  Q
    |||||| ||||| ||||||    
T  116910 tatatactatgattattga 116928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 509 times since January 2019
Visitors: 6717