View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_high_6 (Length: 362)
Name: NF0886_high_6
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 351
Target Start/End: Complemental strand, 37285664 - 37285342
Alignment:
| Q |
29 |
aattttcaggtaccatttagtttccaaaagatcaaaatgtaataccagtatggaaaaagttttacataggagatttcaagttcaaagaagggatcatcac |
128 |
Q |
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| T |
37285664 |
aattttcaggtaccatttagtttccaaaagatcaaaatgtaataccagtatggaaaaagttttacataggagatttcaagttcaaagaagggatcatcac |
37285565 |
T |
|
| Q |
129 |
tacatacatgtgcgttatgctggaggagctgaattatcctcttcttctagttccagcattgaaaaatatgttggagaggaaattcaagaggatatttcaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37285564 |
tacatacatgtgcgttatgctggaggagctgaattatcctcttcttctagttccagcattgaaaaaaatgttggagaggaaattcaagaggatatttcaa |
37285465 |
T |
|
| Q |
229 |
tggaaacattgatttggagggctatcaagttgcctatttactctgttgctttggtccctctcactgtgagcatctcaactatatatacttttagattaat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37285464 |
tggaaacattgatttggagggctatcaagttgcctatttactctgttgctttggtccctctcactgtgagcatctcaactatatatacttttagattaat |
37285365 |
T |
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| Q |
329 |
tgttaaattcagcataggttcat |
351 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37285364 |
tgttaaattcagcataggttcat |
37285342 |
T |
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