View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_high_7 (Length: 330)
Name: NF0886_high_7
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 51684142 - 51684446
Alignment:
| Q |
25 |
catcaaagtttaatgatatgatgtgttatgtatcgaatcataattcatctagcactatgaataacatcaatacactcgttttgtaaacaagtttagggct |
124 |
Q |
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| T |
51684142 |
catcaaagtttaatgatatgatgtgttatgtatcgaatcataattcatctagcactatgaataacatcaatacactcgttttgtaaacaagtttagggct |
51684241 |
T |
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| Q |
125 |
gtgttcacttgttacatattgttttggacttgaatcgatgcactcttttcttagaatgttttcctttgtcaaatttataacctgnnnnnnnctctttgta |
224 |
Q |
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| T |
51684242 |
gtgttcacttgttacatattgttttggacttgaatcgatgcactcttttcttagaatgttttcctttgtcaaatttataacctgtttttttctctttgta |
51684341 |
T |
|
| Q |
225 |
atgatattgacaacccttgtataccaactatctatcatcgacacnnnnnnnnnnncaaaccatgtcccatgtccaacatatattcatgtccgacactaat |
324 |
Q |
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| T |
51684342 |
atgatattgacaacccttgtacaccaactatctatcatcgaca-tttttttttttcaaaccgtgtcccatgttcaacatatgttcatgtccgacactaat |
51684440 |
T |
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| Q |
325 |
acaata |
330 |
Q |
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|||||| |
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| T |
51684441 |
acaata |
51684446 |
T |
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