View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_high_9 (Length: 320)
Name: NF0886_high_9
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 26297804 - 26297904
Alignment:
| Q |
17 |
atggacatcatcatcacttgtttagcaagaaatcttcaacatttaagttttataagtagaaaatcttcaacatttattctacttgatttatgtatttaat |
116 |
Q |
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| T |
26297804 |
atggaaatcatcatcacttgtttaacaagaaatcttcaacatttaagttttataagtagaaaatcttcaacatttattctacttgatttatgtatttaat |
26297903 |
T |
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| Q |
117 |
c |
117 |
Q |
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| T |
26297904 |
c |
26297904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 26298602 - 26298690
Alignment:
| Q |
231 |
atagcaaacaacaattaaatcacatatagttggacatgagaattggatttaatcttgagtattaacacggtaatgaattatgcatgaaac |
320 |
Q |
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| T |
26298602 |
atagaaaacaacaattaaatcacatatagttgaacatgagaattggatttagtattgagtattaacacggtaa-gaattatgcatgaaac |
26298690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 26298452 - 26298536
Alignment:
| Q |
110 |
atttaatcacataaactcaaaaccaaagtttcataggtagttataaataatataaaaaatgagtgcaactttgtcttgagattac |
194 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||| |
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| T |
26298452 |
atttaatcacataaactcaaatccaaagttacataggtagttataaataatctaaaaaatgggtgcaagtttgtcttgagcttac |
26298536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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