View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0886_low_12 (Length: 385)
Name: NF0886_low_12
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 54180157 - 54180342
Alignment:
| Q |
37 |
taaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatctttggtataaccataatagcatccaacaagtttgcaaccc |
136 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54180157 |
taaacaaaaaactgaattcctaaaaacatccataacatgaacaggatcgccacaacgatctttgttataaccataatagcatccaacaagtttgcaaccc |
54180256 |
T |
|
| Q |
137 |
ttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaata |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54180257 |
ttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaata |
54180342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 252 - 385
Target Start/End: Original strand, 54180372 - 54180505
Alignment:
| Q |
252 |
gccacccaaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga |
351 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54180372 |
gccacccaaaaatttgagcatcattagtaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga |
54180471 |
T |
|
| Q |
352 |
catgttacttgcttccggtaaaaacatcaacttt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54180472 |
catgttacttgcttccggtaaaaacatcaacttt |
54180505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 41942981 - 41942793
Alignment:
| Q |
37 |
taaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatctttggtat---aaccataatagcatccaacaagtttgcaa |
133 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||| ||||||||||||| |||| | ||| || |||||| ||| |||| ||||| ||||||| |
|
|
| T |
41942981 |
taaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcggcaactttttttcttactagaaccatgataacatcgaacaaatttgcaa |
41942882 |
T |
|
| Q |
134 |
cccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaata |
222 |
Q |
| |
|
| ||| |||||||| ||||||| |||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
41942881 |
ctcttagaagattcacaatgtttgattaactcatttctaatagaagatgttgaattaggtcttggagcaccgacaaatgaaaacaaata |
41942793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 22794922 - 22794822
Alignment:
| Q |
122 |
acaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaat |
221 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||| ||||||||||| || ||||| |||||||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
22794922 |
acaagtttgcaactcttagaagattgacaatgatcgattaactcgtttctaattgaagatgttaaatttggccttggagcaccgacaaatgaaaacaaat |
22794823 |
T |
|
| Q |
222 |
a |
222 |
Q |
| |
|
| |
|
|
| T |
22794822 |
a |
22794822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 41948424 - 41948307
Alignment:
| Q |
105 |
aaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcacc |
204 |
Q |
| |
|
|||||| ||| ||||||||| |||| |||| ||| |||||||||||||||| |||||||| ||| |||| |||||||| | || ||||||||||||||| |
|
|
| T |
41948424 |
aaccatgataacatccaacacgtttacaactcttagaagattcgcaatgtttgattaactgatttctaacagaagatggtgaatcaggccttggagcacc |
41948325 |
T |
|
| Q |
205 |
aacaaatgaaaacaaata |
222 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
41948324 |
gacaaatgtaaacaaata |
41948307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 41948270 - 41948205
Alignment:
| Q |
259 |
aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcata |
324 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
41948270 |
aaaaatttcatcatcatttgtaggatgaaaataagttggatatggaattggaaattcattgtcata |
41948205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 22794764 - 22794720
Alignment:
| Q |
280 |
aggatgaaaataagttggatatggaattgaaaattcattatcata |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
22794764 |
aggatgaaaataagttggatatggaattgcaaattcattctcata |
22794720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 41942734 - 41942691
Alignment:
| Q |
281 |
ggatgaaaataagttggatatggaattgaaaattcattatcata |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
41942734 |
ggatgaaaataagttggatatggaattggaaattcattgtcata |
41942691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 1211248 - 1211060
Alignment:
| Q |
37 |
taaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatctttggtat---aaccataatagcatccaacaagtttgcaa |
133 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||| ||||||||||||| ||||| | ||| || |||||| ||| ||||||||| |||| ||| |
|
|
| T |
1211248 |
taaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcgacaactttttttcttactagaaccatgataacatccaacacgtttacaa |
1211149 |
T |
|
| Q |
134 |
cccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaata |
222 |
Q |
| |
|
| ||| ||||||||||||||||||||||||| ||| ||||||||||||| | || ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
1211148 |
ctcttagaagattcgcaatgttcgattaactgatttctaatagaagatggtgaatcaggccttggagcaccgacaaatgtaaacaaata |
1211060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Complemental strand, 1211023 - 1210958
Alignment:
| Q |
259 |
aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcata |
324 |
Q |
| |
|
|||||||| | ||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
1211023 |
aaaaatttcatcatcatttgtagcatgaaaataagttggatatggaattggaaattcattgtcata |
1210958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 711 times since January 2019
Visitors: 6719