View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_14 (Length: 378)
Name: NF0886_low_14
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 10541864 - 10541619
Alignment:
| Q |
1 |
tgtgtaaaagttgttttt-ccaatgagttatcaaaaaactctattgcattgacacttcagattaaaggcgtgtctagtatccgaaatgacactaacaaac |
99 |
Q |
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| T |
10541864 |
tgtgtataagttgttttttccaatgagttatcaagaaactctattgcattgacacttcagatgaaaggcgtgtctagtatccgaaatgacactaacaaac |
10541765 |
T |
|
| Q |
100 |
tagtaataatggaacaaatgatatgagactggttatcacttgttgaataacatcatcacataaatggaaaagtgtaccctttccactatttagnnnnnnn |
199 |
Q |
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| T |
10541764 |
tagtaataatggaacaaatgatatgagactggttatcacttgttgaataacatcatcacataaatggaaaagtgtaccctttccactatttag-tttttt |
10541666 |
T |
|
| Q |
200 |
atcataccctgactgtgtaatcatctacatcaatatttcatatcagt |
246 |
Q |
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| T |
10541665 |
atcatacactgactgtgtaatcatctacatcaatatttcatgtcagt |
10541619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 10536017 - 10535969
Alignment:
| Q |
138 |
cttgttgaataacatcatcacataaatggaaaagtgtaccctttccact |
186 |
Q |
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| T |
10536017 |
cttgttgaatgacatcatcacataaatggagaagtgtacccttcccact |
10535969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 32474937 - 32474892
Alignment:
| Q |
138 |
cttgttgaataacatcatcacataaatggaaaagtgtaccctttcc |
183 |
Q |
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| T |
32474937 |
cttgttgaatgacatcatcacacaaatggagaagtgtaccctttcc |
32474892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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