View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_19 (Length: 321)
Name: NF0886_low_19
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 321
Target Start/End: Complemental strand, 36691452 - 36691161
Alignment:
| Q |
30 |
aatataagctccgagtgtatcttgctagggaacacttttgagccgaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaaca |
129 |
Q |
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| T |
36691452 |
aatataagctccgagtgtatcttgctagggaacacttttgagcccaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaaca |
36691353 |
T |
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| Q |
130 |
taggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatac |
229 |
Q |
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| T |
36691352 |
taggatctggaaagaaggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttggccaaacaagtgattgtttaagtaatac |
36691253 |
T |
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| Q |
230 |
taatgttccgtttgcgacctacacatattccaatcctatgaatctgttggaggactattttgggttctatgatgcagtgaatgaatctctaa |
321 |
Q |
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| T |
36691252 |
taatgttccgtttgcgacctacacatatcctaatcctatgaatctgttggaggaccattttgggttctatgatgcagtgaatgaatctctaa |
36691161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 23655121 - 23654964
Alignment:
| Q |
45 |
tgtatcttgctagggaacacttttgagccgaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaaga |
144 |
Q |
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| T |
23655121 |
tgtatcttgttagggaaaaattttgagccaaagatatccaatttcggagggatcatgtttatgaataatgatctggaaaaaaacataggacttgagaaga |
23655022 |
T |
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| Q |
145 |
aggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttgg |
202 |
Q |
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| T |
23655021 |
aggatgtttctgactttggttgtttgctttttgagctgattaatgggaataaatttgg |
23654964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 23803449 - 23803606
Alignment:
| Q |
45 |
tgtatcttgctagggaacacttttgagccgaaaatatccaattttggaggggccatgtttatgaataatgatgtgaaccaaaacataggatctggaaaga |
144 |
Q |
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||||||||| ||||||| | ||||||||| || ||||||||||| |||||| ||||||||||||||||||| || | ||||||||||| || |||| |
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| T |
23803449 |
tgtatcttgttagggaaaaattttgagccaaagatatccaatttcggagggatcatgtttatgaataatgatctggaaaaaaacataggacttgagaaga |
23803548 |
T |
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| Q |
145 |
aggatgtttatgattttggttgtttgctttttgagctgattaaggggaagaaatttgg |
202 |
Q |
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| T |
23803549 |
aggatgtttctgactttggttgtttgctttttgagctgattaatgggaataaatttgg |
23803606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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