View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_20 (Length: 321)
Name: NF0886_low_20
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 48833528 - 48833254
Alignment:
| Q |
23 |
atcatcaagtttcaggctttcaacgagaatgctttcctgaagtatttggagtagttagttcatgtcatgttgattctggcacttattcaaccaacaaatt |
122 |
Q |
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| T |
48833528 |
atcatcaagtttcaggctttcaacgagaatgctttcctgaagtatttggagtagttagttcatgtcatgttgattctggcacttattcaagcaacaaaat |
48833429 |
T |
|
| Q |
123 |
aagcatattttgacagtcaaccttcaattatccaaaggaacaaaagacatcactagcaggctcgtttaaaattgcacatatttaccaacaaattcgaaaa |
222 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833428 |
aagcatattttgacattcaaccttcaattatccaaaggaacaaaagacatcactagcaggctcgtttaaaattgcacatatttaccaacaaattcgaaaa |
48833329 |
T |
|
| Q |
223 |
tatctttcaagctatcaagtttaatattttatcagaataacagacaccaaatcaaccaagcactgagatttgatg |
297 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48833328 |
tatctttcaagctattaagtttaatattttatcagaataacagacaccaaatcaaccaagcactgagatttgatg |
48833254 |
T |
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