View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_26 (Length: 301)
Name: NF0886_low_26
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 27045565 - 27045768
Alignment:
| Q |
1 |
ggagtgtgatcgatcgagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045565 |
ggagtgtgatcgatcgagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattga |
27045664 |
T |
|
| Q |
101 |
gctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045665 |
gctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaac |
27045764 |
T |
|
| Q |
201 |
taac |
204 |
Q |
| |
|
|||| |
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|
| T |
27045765 |
taac |
27045768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 27056480 - 27056665
Alignment:
| Q |
16 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
115 |
Q |
| |
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|||||| |||||||||||| | ||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
27056480 |
gagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcgttgagctcactcactttta |
27056579 |
T |
|
| Q |
116 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaact |
201 |
Q |
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| ||||| ||| |||| | ||||| ||| ||||| |||||| |||| |||| ||||||| | | || | ||||||||||||||||| |
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| T |
27056580 |
aaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataatcctccaagttgcgtctaataccaact |
27056665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 27069598 - 27069729
Alignment:
| Q |
25 |
acataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaacacaactt |
124 |
Q |
| |
|
||||||||||||| | ||| ||| ||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
27069598 |
acataatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcatcgagctcactcacttttaaaacaactt |
27069697 |
T |
|
| Q |
125 |
ttccatccacagtagtattaccataataccct |
156 |
Q |
| |
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|| |||||| |||| ||| || ||||||||| |
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| T |
27069698 |
ttgcatccatggtagaattcccgtaataccct |
27069729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 27098314 - 27098492
Alignment:
| Q |
19 |
tttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
118 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||| |||| |||| | ||||| |||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
27098314 |
tttttgacaaaatcagtggtggaagcaatgtttttagtctctctgatgagcttaataatttcatagagtggcctttcatcgagctcactaacttttaaca |
27098413 |
T |
|
| Q |
119 |
caacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaatacc |
197 |
Q |
| |
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|| ||| |||| ||| | ||| |||||||| || |||| ||||||||| || | |||| | ||||||||||||| |
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|
| T |
27098414 |
cagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggatcaaaatccttcaagttgcgtctaatacc |
27098492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 27062522 - 27062710
Alignment:
| Q |
16 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
115 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| |||||| |||| ||||||||||||||||| ||| ||||| ||||||| |
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| T |
27062522 |
gagtttcttacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaacgattttatagagtggcatttcatcgagttcactcactttta |
27062621 |
T |
|
| Q |
116 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaac |
204 |
Q |
| |
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| ||||||||| |||| | |||| ||| |||||||||||| |||| |||| |||||| | ||| | | ||||| |||||||||||| |
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| T |
27062622 |
aaacaacttttgcatctatggtagaattgccataataccctttaggtaaagtttcataatccatcaagtttcgtctgataccaactaac |
27062710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 27085645 - 27085830
Alignment:
| Q |
16 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
115 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| |||| ||||||| |
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| T |
27085645 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagcacactcactttta |
27085744 |
T |
|
| Q |
116 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaact |
201 |
Q |
| |
|
| ||||| ||| |||| | | ||| ||| |||||||||||| |||| |||| ||||||| | || | | |||||||| |||||||| |
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|
| T |
27085745 |
aaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatcctttaagttgcgtctactaccaact |
27085830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 27041208 - 27041348
Alignment:
| Q |
16 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
115 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
27041208 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcactcactttta |
27041307 |
T |
|
| Q |
116 |
acacaacttttccatccacagtagtattaccataataccct |
156 |
Q |
| |
|
| ||||| ||| |||| | ||||| ||| |||||||||||| |
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|
| T |
27041308 |
aaacaacatttacatctatagtagaatttccataataccct |
27041348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 27105313 - 27105414
Alignment:
| Q |
19 |
tttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
118 |
Q |
| |
|
||||||| | ||||||||| ||||||||| ||||||| |||| | || | |||| |||||||||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
27105313 |
tttttgataaaatcagtggtggaagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaaca |
27105412 |
T |
|
| Q |
119 |
ca |
120 |
Q |
| |
|
|| |
|
|
| T |
27105413 |
ca |
27105414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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