View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_3 (Length: 627)
Name: NF0886_low_3
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 389
Target Start/End: Original strand, 17608136 - 17608495
Alignment:
| Q |
30 |
cattcaacacttgtctcacacatagctccttacccttcatatgtgtatgnnnnnnnnagaagggtcacgttcttctcttgnnnnnnngtcacaatcattt |
129 |
Q |
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| T |
17608136 |
cattcaacacttgtctcacacatagctccttacccttcatatgtgtatgttttttttagaagggtcacgttcttctcttgtttttttgtcacaatcattt |
17608235 |
T |
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| Q |
130 |
caaactaaggaagagaaaagagagaaaagaggaggaaggggttttggattttgatatggagaataatcacatggtgaaggaggaaatgctagatgaagaa |
229 |
Q |
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| T |
17608236 |
caaattaaggaagagaaaagagagaaaagaggaggaaggggttttggattttggtatggagaataatcacatggtgaaggaggaaatggtagatgaagaa |
17608335 |
T |
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| Q |
230 |
gaagtggtggaacatgatgagattagtcccattggtgatggtgaagatgatgaagatgttgtttccaccttaaccatggaaagggttgctgctgctaaga |
329 |
Q |
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| T |
17608336 |
gaagtggtggaacatgatgagattagtcccattggtgatggtgaagatgatgaagatgttgtttccaccttaaccatggaaagggttgctgctgctaaga |
17608435 |
T |
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| Q |
330 |
aattcattgagagtcattataagtctcagatgaaacacattcaagaacgcaaagaaaggt |
389 |
Q |
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| T |
17608436 |
aattcattgagagtcattataagtctcaaatgaaacacattcaagaacgcaaagaaaggt |
17608495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 525 - 615
Target Start/End: Original strand, 17608628 - 17608718
Alignment:
| Q |
525 |
ataatcatgttattggtgcgaagtatcacctggttttgccacctctccaaaccgtgnnnnnnncacccacattgattgaacccgaaatatt |
615 |
Q |
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| T |
17608628 |
ataatcatgttattggtgcgaagtatcacctggttttgccacctctccaaaccgtgtttttttcacccacattgattgaacccgaaatatt |
17608718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 17608542 - 17608603
Alignment:
| Q |
436 |
gtcttggttaagatctgtttgtttcactttgcatgttg-ttgatgacctccttttgtgaaat |
496 |
Q |
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| T |
17608542 |
gtcttggttaagatctgtttgtttcactttgcatgttgtttgatgacctccttttgtgaaat |
17608603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 479
Target Start/End: Original strand, 17667292 - 17667327
Alignment:
| Q |
443 |
ttaagatctgtttgtttcactttgcatgttgttgatg |
479 |
Q |
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| T |
17667292 |
ttaagatctgtttgtt-cactttgcatgttgttgatg |
17667327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 479
Target Start/End: Original strand, 17704800 - 17704835
Alignment:
| Q |
443 |
ttaagatctgtttgtttcactttgcatgttgttgatg |
479 |
Q |
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| T |
17704800 |
ttaagatctgtttgttt-actttgcatgttgttgatg |
17704835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 48256410 - 48256479
Alignment:
| Q |
320 |
gctgctaagaaattcattgagagtcattataagtctcagatgaaacacattcaagaacgcaaagaaaggt |
389 |
Q |
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| T |
48256410 |
gctgctaagaaattcattgagaatcattacagggcacagatgaaaaatattcaagatcggaaagagaggt |
48256479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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