View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_43 (Length: 263)
Name: NF0886_low_43
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35354554 - 35354751
Alignment:
| Q |
1 |
tacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggaatttttatact |
100 |
Q |
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||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
35354554 |
tacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacagcaatattgcatgctggaccagtggagtttttatact |
35354653 |
T |
|
| Q |
101 |
attggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgtcactgagcctatcacttgtatgaac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
35354654 |
attggcttcatagagcacttcatcatcattatctatactctcgttatcactctcatcaccattcttcaattgttactgagcctatcacttgtatgaac |
35354751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35369699 - 35369896
Alignment:
| Q |
1 |
tacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggaatttttatact |
100 |
Q |
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||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
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| T |
35369699 |
tacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacagcaatattgcatgctggaccagtcgagtttttatact |
35369798 |
T |
|
| Q |
101 |
attggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgtcactgagcctatcacttgtatgaac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35369799 |
attggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctgtcacttgtatgaac |
35369896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 35379064 - 35379255
Alignment:
| Q |
7 |
atatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggaatttttatactattggc |
106 |
Q |
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||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
35379064 |
atatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacagcaatattgcatgctggaccagtcgagtttttatactattggc |
35379163 |
T |
|
| Q |
107 |
ttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgtcactgagcctatcacttgtatgaac |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35379164 |
ttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattcttcaattgtcactgagcctatcacttgtatgaac |
35379255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 19630671 - 19630480
Alignment:
| Q |
7 |
atatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggaatttttatactattggc |
106 |
Q |
| |
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||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| || ||||||||||||| |
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| T |
19630671 |
atatttcctatggctgctaacttaccatggtggagaacagatggtgtggttcttacagctctcttgcatgctggaccagtggagttcttatactattggc |
19630572 |
T |
|
| Q |
107 |
ttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgtcactgagcctatcacttgtatgaac |
198 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19630571 |
tacatagagcacttcatcatcattatctatactctcgttaccattctcatcatcattcttcaattgtcaccgagcctatcacttgtatgaac |
19630480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 19684120 - 19684317
Alignment:
| Q |
1 |
tacatgatatttcctatagcctctaatttaccatggtggagaacagatggtgtgattcttacagtaatattgcatgctggaccagtggaatttttatact |
100 |
Q |
| |
|
|||| |||||||||||| || | || ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||||||| |
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| T |
19684120 |
tacacgatatttcctatggctgccaacttaccatggtggagaacagatggtgtgattcttacagctatcttgcatgctggaccagtggagttcttatact |
19684219 |
T |
|
| Q |
101 |
attggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgtcactgagcctatcacttgtatgaac |
198 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
19684220 |
attggctacatagagcacttcatcatcattatctatattctcgttaccattctcaccatcattcttcaattgtcactgaacctatcactggtatgaac |
19684317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 2258558 - 2258463
Alignment:
| Q |
78 |
tggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgt |
173 |
Q |
| |
|
|||||||||||| ||| | ||||||||| | || ||||||||||||||||||| || || ||| | ||||||||||||||||||||||| ||||| |
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| T |
2258558 |
tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgt |
2258463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 2280553 - 2280453
Alignment:
| Q |
73 |
catgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattg |
172 |
Q |
| |
|
||||||||| |||| |||||| | || |||||| | || ||||||||||||||||||| || || ||| | ||||||||||||||||||||||| |||| |
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| T |
2280553 |
catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg |
2280454 |
T |
|
| Q |
173 |
t |
173 |
Q |
| |
|
| |
|
|
| T |
2280453 |
t |
2280453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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