View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_45 (Length: 260)
Name: NF0886_low_45
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 45439412 - 45439183
Alignment:
| Q |
21 |
acatcatcatttaagtttataatgtttgatttgtgttttgatatatgattatcgaggaattcatacctggacaatccgttcttggtgaacttaattcccc |
120 |
Q |
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| T |
45439412 |
acatcatcatttaagtttataatgtttgatttgtgttttggtatatgattatcgaggaattcatacctggacaatccgttcttggtgaacttaattcccc |
45439313 |
T |
|
| Q |
121 |
aacaatatcctcaaatgtcccagcccatgcatctctgtgagtcaaaaagttagaggaaaggttgaacatcttctttatggtggctggaattgaagagtgc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45439312 |
aacaatatcctcaaatgtcccagcccatgcatctctgtgagtcaaaaagttagaggaaaggttgaacatcttctttatggtggcaggaattgaagagtgc |
45439213 |
T |
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| Q |
221 |
tcaaactcggaattcgcagctggtcctttg |
250 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45439212 |
tcaaactcggaattcgcagctggtcctttg |
45439183 |
T |
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