View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_46 (Length: 257)
Name: NF0886_low_46
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_46 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 26833606 - 26833843
Alignment:
| Q |
21 |
acatcatcaacgacatgcctaggcaaagaagcactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaacgaaactcgagttgtaa |
120 |
Q |
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| T |
26833606 |
acatcatcaacgacatgcctaggcaaacaaacactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaaagaaactcgtgttgtaa |
26833705 |
T |
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| Q |
121 |
accaagtccattccttgctccttgaaaagcatacannnnnnnacttcaaatgnnnnnnngaataaatttaaccaactttacttaaagaaaaggagaaaaa |
220 |
Q |
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| T |
26833706 |
accaagtccattccttgctccttgaaaagcatacatttttttacttcaaatgtttttttgaataaatttaaccaactttacttaaagaaaaggagaaaaa |
26833805 |
T |
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| Q |
221 |
cttgtttttgtttcca-gggtcatgcagaaaagaaact |
257 |
Q |
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| T |
26833806 |
cttgtttttgtttccaggggtcatgcagaaaagaaact |
26833843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 26786819 - 26786891
Alignment:
| Q |
23 |
atcatcaacgacatgcctaggcaaagaagcactgcaactctcagcaatggcacgatcaatggctctctgattt |
95 |
Q |
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|||||||| ||||||| |||||| | || ||||||| ||||||||| |||||||||||| || ||||| |||| |
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| T |
26786819 |
atcatcaatgacatgcttaggcagataaacactgcagctctcagcattggcacgatcaaaggttctcttattt |
26786891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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