View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0886_low_48 (Length: 255)

Name: NF0886_low_48
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0886_low_48
NF0886_low_48
[»] chr5 (10 HSPs)
chr5 (20-255)||(26702-26937)
chr5 (39-251)||(20317753-20317965)
chr5 (53-251)||(2076782-2076980)
chr5 (39-251)||(1288836-1289048)
chr5 (60-251)||(24177307-24177498)
chr5 (110-247)||(3095120-3095257)
chr5 (139-207)||(10597748-10597815)
chr5 (139-226)||(31503344-31503431)
chr5 (122-164)||(43522185-43522227)
chr5 (124-164)||(18132402-18132442)
[»] chr1 (6 HSPs)
chr1 (39-251)||(49348709-49348921)
chr1 (39-251)||(51442072-51442284)
chr1 (39-253)||(32405765-32405972)
chr1 (44-251)||(35829697-35829901)
chr1 (163-250)||(29173840-29173927)
chr1 (122-250)||(52836012-52836139)
[»] chr8 (5 HSPs)
chr8 (39-253)||(13588470-13588683)
chr8 (39-251)||(36543914-36544126)
chr8 (41-251)||(15216577-15216787)
chr8 (110-250)||(33667163-33667301)
chr8 (62-114)||(41148321-41148373)
[»] chr7 (6 HSPs)
chr7 (53-251)||(36650770-36650968)
chr7 (40-220)||(32629375-32629555)
chr7 (39-251)||(11592452-11592663)
chr7 (40-251)||(33351114-33351325)
chr7 (46-222)||(24178532-24178709)
chr7 (190-250)||(8228716-8228776)
[»] chr2 (7 HSPs)
chr2 (38-251)||(8179554-8179767)
chr2 (62-250)||(37280893-37281080)
chr2 (33-250)||(11502822-11503038)
chr2 (39-252)||(28409700-28409911)
chr2 (139-239)||(13148185-13148284)
chr2 (139-250)||(7135945-7136055)
chr2 (191-251)||(24584917-24584977)
[»] chr3 (5 HSPs)
chr3 (40-225)||(9257864-9258049)
chr3 (37-228)||(3368523-3368714)
chr3 (39-251)||(51449017-51449225)
chr3 (139-251)||(38848964-38849076)
chr3 (99-207)||(48252473-48252580)
[»] chr4 (9 HSPs)
chr4 (39-251)||(48623835-48624047)
chr4 (39-251)||(23907610-23907822)
chr4 (63-251)||(16001250-16001436)
chr4 (41-229)||(56224527-56224715)
chr4 (39-216)||(27451505-27451683)
chr4 (39-114)||(55769788-55769863)
chr4 (39-114)||(55834044-55834119)
chr4 (170-206)||(55769696-55769732)
chr4 (170-206)||(55833952-55833988)
[»] chr6 (10 HSPs)
chr6 (140-251)||(5260556-5260667)
chr6 (140-251)||(9705661-9705772)
chr6 (41-220)||(20428976-20429155)
chr6 (139-250)||(26290646-26290757)
chr6 (139-219)||(3629153-3629233)
chr6 (188-251)||(6082300-6082363)
chr6 (148-244)||(30242562-30242658)
chr6 (179-252)||(30243640-30243713)
chr6 (39-180)||(6081210-6081351)
chr6 (79-229)||(14167701-14167852)
[»] scaffold0113 (1 HSPs)
scaffold0113 (141-251)||(13565-13675)
[»] scaffold0220 (1 HSPs)
scaffold0220 (124-228)||(25538-25642)
[»] scaffold0083 (1 HSPs)
scaffold0083 (143-228)||(52040-52125)
[»] scaffold0024 (1 HSPs)
scaffold0024 (47-134)||(74760-74847)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 26702 - 26937
Alignment:
Q  20 gacatcatcaagaagggttgaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggtta 119  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26702 gacatcataaagaagggttgaaactttaactactatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggtta 26801  T
Q  120 agccagacaacatactgactgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26802 agccagacaacatactgactgaagtgtggaaaagtcttggagatagaggaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaat 26901  T
Q  220 gtcggatgaggggaaaagaaacactttaattctgtt 255  Q
    |||||||||| |||||||||||||||||||||||||    
T  26902 gtcggatgagtggaaaagaaacactttaattctgtt 26937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 20317753 - 20317965
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || ||||||||||||||||| |||  ||| | |||||| ||||||||| |||||| ||| ||||  |||  ||| ||||||||||  |     
T  20317753 gaaactataattattatcgttggattcaagagcacaaggttagagaagcgttgaaaaggatgagtagtggtaaggtagttgggccggacaacatacatat 20317852  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
      |||||||||| |||||||| ||||||   |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| ||| ||||    
T  20317853 ccaagtgtggaagagtcttggcgatagagagattgtgtggctcacaaacctttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaaga 20317952  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  20317953 agcactttaattc 20317965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 2076980 - 2076782
Alignment:
Q  53 tatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaagtgtggaaaa 152  Q
    |||||| |||||||||| |||| ||| | |||||| ||||||||| |||||| ||||||||| |||  ||| ||||||||||  |   |||||||||| |    
T  2076980 tatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgagtagtggcaaggcagttgggccggacaacatacctatccaagtgtggaaga 2076881  T
Q  153 gtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaattc 251  Q
    ||||||| |||||| | ||||||||||||||  | | ||||||||| ||||||||||| |||||||||||||| ||| ||| ||||| |||||||||||    
T  2076880 gtcttggcgatagagggattgtgtggctcacagacccttttaacgacattatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattc 2076782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 1289048 - 1288836
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||||||||| |||| | ||| | ||| |||  ||| ||||||||||  |     
T  1289048 gaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgaggagtggtagggcagttgggccggacaacatacctat 1288949  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
     ||||||||||| |||||||| |||||| | ||||| |||||||| || ||||||||||||||||||||||| |||||||||||| | ||| ||| ||||    
T  1288948 cgaagtgtggaagagtcttggtgatagagggattgtatggctcacaaacctttttaacgagattatgaggacgaagaaaatgtcgaacgagtggagaaga 1288849  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  1288848 agcactttaattc 1288836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 251
Target Start/End: Original strand, 24177307 - 24177498
Alignment:
Q  60 ggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaagtgtggaaaagtcttgg 159  Q
    |||||||||| || | ||| | |||||| ||||||||| |||||| ||||||||| |||  ||| ||||| ||||  |  ||||||||||| ||||||||    
T  24177307 ggattcaagagcatgaggttagagaagcgttgaaaaggatgagtagtggcaaggcagttgggccggacaatatacctatcgaagtgtggaagagtcttgg 24177406  T
Q  160 agatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaattc 251  Q
     |||||| | |||||||||||||| || ||||||||| ||||||||||||| ||||||||| || ||||| ||| || || |||||||||||    
T  24177407 cgatagagggattgtgtggctcacaaacctttttaacaagattatgaggacgaagaaaatgccgaatgagtggagaaaaagcactttaattc 24177498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 3095120 - 3095257
Alignment:
Q  110 aaggcggttaagccagacaacatactgactgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgagga 209  Q
    ||||| ||| || ||||||||||||  | |||| | ||||| ||||||||||| ||| | |||| |||||||||| | ||||| |||||||||||||||     
T  3095120 aaggcagttgagacagacaacatacctattgaattatggaacagtcttggagacagaggtattgggtggctcacccagcttttcaacgagattatgaggt 3095219  T
Q  210 caaagaaaatgtcggatgaggggaaaagaaacacttta 247  Q
    ||||  |||| || |||||  ||| ||||| |||||||    
T  3095220 caaaacaaatatcagatgactggagaagaatcacttta 3095257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 10597815 - 10597748
Alignment:
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgag 207  Q
    ||||||||||||| |||||||||| || || | |||||||||||||||| |||||| ||| ||||||||    
T  10597815 tgaagtgtggaaa-gtcttggagaaagcagcaatgtgtggctcaccaaattttttatcgaaattatgag 10597748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 31503431 - 31503344
Alignment:
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggat 226  Q
    |||||||||||| | |||  ||||||||   |||| |||||||||||| ||||  |||||||||||||   |||||||||||||||||    
T  31503431 tgaagtgtggaacaatctatgagatagagatattgggtggctcaccaagctttacaacgagattatgatatcaaagaaaatgtcggat 31503344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 43522185 - 43522227
Alignment:
Q  122 ccagacaacatactgactgaagtgtggaaaagtcttggagata 164  Q
    ||||||||||||| || ||||||||||||| ||||||||||||    
T  43522185 ccagacaacatacagattgaagtgtggaaatgtcttggagata 43522227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 18132442 - 18132402
Alignment:
Q  124 agacaacatactgactgaagtgtggaaaagtcttggagata 164  Q
    ||||||||||| || ||||||||||||| ||||||||||||    
T  18132442 agacaacatacagattgaagtgtggaaatgtcttggagata 18132402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 49348921 - 49348709
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||||||||| |||||| ||||||||| |||  ||| ||||||||||  |     
T  49348921 gaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgagtagtggcaaggcagttgggccggacaacatacctat 49348822  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
     ||||||||||| |||||||| |||| | | |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| ||| ||||    
T  49348821 cgaagtgtggaagagtcttggcgatacagggattgtgtggctcacaaacctttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaaga 49348722  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  49348721 agcactttaattc 49348709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 51442284 - 51442072
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||||||||| |||||| ||||||||| | |  ||||||||||||||  |     
T  51442284 gaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgagtagtggcaaggcagctgggccagacaacatacctat 51442185  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
     ||| ||||||| |||||||| |||||| | |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||| ||| ||||    
T  51442184 cgaaatgtggaagagtcttggcgatagagggattgtgtggctcacaaacctttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaaga 51442085  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  51442084 agcactttaattc 51442072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 253
Target Start/End: Complemental strand, 32405972 - 32405765
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| |||||| |||| | ||||||||||||| | |||||||||||||||||||||| |||||||||||||||| |||   ||||||      || |     
T  32405972 gaaactataactactatcatcggattcaagaacatgtggtaaaagaagcattgaaaaggatgagtaatggcaaggcagttggaccagac------ct-at 32405880  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
    ||||| |||||||| |||||||| |||  ||||||||||||  ||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| ||||    
T  32405879 tgaagggtggaaaactcttggaggtaggggaattgtgtggccaaccaaactttttaacgaaattacgaggacaaagaaaatgttggatgagtggagaaga 32405780  T
Q  239 aacactttaattctg 253  Q
    |||||||||||||||    
T  32405779 aacactttaattctg 32405765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 35829901 - 35829697
Alignment:
Q  44 tttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaag 143  Q
    ||||||||  ||||||| |||||||||||||| |||   ||| | ||||||| | |||||||| |||| || |||  |||||||| |||||  | |||||    
T  35829901 tttaactaccatcgttgaattcaagaacacggtgta---gaatcgttgaaaatgatgagtaatagcaaagcagttgggccagacagcatacctattgaag 35829805  T
Q  144 tgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacac 243  Q
    |||||||||||||||||| || | | |||  ||||||||||||| |||||||||| |||||||||||| |||||||| |  ||||| ||| ||||| |||    
T  35829804 tgtggaaaagtcttggagttaaaggcatttagtggctcaccaaattttttaacgaaattatgaggacatagaaaatgccaaatgagtggagaagaagcac 35829705  T
Q  244 tttaattc 251  Q
    ||||||||    
T  35829704 tttaattc 35829697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 29173927 - 29173840
Alignment:
Q  163 tagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaatt 250  Q
    |||| ||||||||||| |||||||||||||||||||||||||| | | |||||||||| | || ||| ||| ||||| ||||||||||    
T  29173927 tagaggaattgtgtggttcaccaaactttttaacgagattatgtgaataaagaaaatgccagacgagtggagaagaagcactttaatt 29173840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 52836012 - 52836139
Alignment:
Q  122 ccagacaacatactgactgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgt 221  Q
    |||||||||||||| | |||||| ||||||||| ||| |||||| |  |||| ||||||||| |||||| |||| || |||| |||||||||| |||||     
T  52836012 ccagacaacatacttattgaagtttggaaaagtattgtagatag-atcattgggtggctcacaaaacttattaatgaaattacgaggacaaagcaaatgc 52836110  T
Q  222 cggatgaggggaaaagaaacactttaatt 250  Q
    |  ||||| |||||| ||| | |||||||    
T  52836111 caaatgagtggaaaataaatattttaatt 52836139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 39 - 253
Target Start/End: Original strand, 13588470 - 13588683
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| |||||| |||||| |||||||||  |||| |||||||||||||||||||||  ||| |||||||| | | |||  || |||||| ||||  |     
T  13588470 gaaactataactactatcgtaggattcaagcgcacgaggtaaaagaagcattgaaaagcatgaataatggcatgacagttgggctagacaatatacctat 13588569  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
    || |||||| |||||| |||| |||||| ||||| |||||||||| |||||||||||| ||||||| ||||||||||| ||||| |||||| ||||||||    
T  13588570 tggagtgtgaaaaagt-ttggggatagaggaattatgtggctcactaaactttttaacaagattataaggacaaagaagatgtcagatgagtggaaaaga 13588668  T
Q  239 aacactttaattctg 253  Q
    |||||||||||||||    
T  13588669 aacactttaattctg 13588683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 36543914 - 36544126
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||||||||| || ||| ||||||||| |||  ||| ||||||||||  |     
T  36543914 gaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgggtagtggcaaggcagttgggccggacaacatacctat 36544013  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
      |||||||||| |||||||| |||||| | |||||||||||||| || |||||||| |||||||||||||| |||||||||||||| ||| ||| ||||    
T  36544014 caaagtgtggaagagtcttggcgatagagggattgtgtggctcacaaacctttttaaagagattatgaggacgaagaaaatgtcggacgagtggagaaga 36544113  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  36544114 agcactttaattc 36544126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 251
Target Start/End: Complemental strand, 15216787 - 15216577
Alignment:
Q  41 aactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactg 140  Q
    |||| |||||| ||||||  |||||| || |||| | | |||||||||||||||||| |||||||||||||||| |||  ||| ||||||||||  |       
T  15216787 aactataactattatcgtcagattcaggagcacgagatgaaagaagcattgaaaaggatgagtaatggcaaggcagttgggccggacaacatacctatca 15216688  T
Q  141 aagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaa 240  Q
    |||||||||||||| |||   ||||| ||||| |||||||||| |||||||| ||||||||||||||||| ||||||||| | || ||| ||| |||||     
T  15216687 aagtgtggaaaagtattgactatagaggaattatgtggctcacaaaacttttcaacgagattatgaggacgaagaaaatgccagacgagtggagaagaag 15216588  T
Q  241 cactttaattc 251  Q
    ||| |||||||    
T  15216587 caccttaattc 15216577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 33667301 - 33667163
Alignment:
Q  110 aaggcggttaagccagacaacatactgactgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgagga 209  Q
    ||||| ||| |||||||||||||||  | ||| || |||| |||| ||||||||||| | ||||  ||||||||  | ||||||||| |||||||||||     
T  33667301 aaggcagttgagccagacaacatacctattgaggtatggagaagttttggagatagaggcattggttggctcac--atctttttaacaagattatgaggt 33667204  T
Q  210 caaagaaaatgtcggatgaggggaaaagaaacactttaatt 250  Q
    |||||||||||| |  |||| ||| ||||| ||||||||||    
T  33667203 caaagaaaatgttgagtgagaggagaagaatcactttaatt 33667163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 41148321 - 41148373
Alignment:
Q  62 attcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggc 114  Q
    ||||||||||||   |||||| |||| ||||||||| ||||||||||||||||    
T  41148321 attcaagaacacatagtaaaaaaagcgttgaaaaggatgagtaatggcaaggc 41148373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 36650770 - 36650968
Alignment:
Q  53 tatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaagtgtggaaaa 152  Q
    |||||| |||||||||| |||| ||| | |||||| ||||||||| |||||| ||||||||| |||  ||||||||||||||  |  ||||||||||| |    
T  36650770 tatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgagtagtggcaaggcagttgggccagacaacatacctatcgaagtgtggaaga 36650869  T
Q  153 gtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaattc 251  Q
    ||||||| |||||| | |||||||||||||| || |||||| |||||||||||||||| ||||||||| |||| ||| ||| ||||| |||||||||||    
T  36650870 gtcttggcgatagagggattgtgtggctcacaaacctttttgacgagattatgaggacgaagaaaatgccggacgagtggagaagaatcactttaattc 36650968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 32629375 - 32629555
Alignment:
Q  40 aaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgact 139  Q
    ||||| |||||| |||||| ||||||| || |||| ||| |||||||| ||||||||| |||||||||| ||||| |||  ||| ||||||||||  |      
T  32629375 aaactataactattatcgtcggattcaggagcacgaggtgaaagaagcgttgaaaaggatgagtaatggtaaggcagttgggccggacaacatacctatc 32629474  T
Q  140 gaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatg 220  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||  || |||||||||    
T  32629475 gaagtgtggaaaagtcttggcgatagaggaattgtgtggctcacaaaacttttcaacgagattatgaaaacgaagaaaatg 32629555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 11592452 - 11592663
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||||||||| |||||| ||||||||| |||  ||| |||||||| |  ||    
T  11592452 gaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgagtagtggcaaggcagttgggccggacaacatccctac 11592551  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
     ||||||||||| |||||||| |||||| | |||||||| ||||| || ||||||||||||| ||||||||| ||||||||| |||| ||| ||| ||||    
T  11592552 -gaagtgtggaagagtcttggcgatagagggattgtgtgactcacaaacctttttaacgagactatgaggacgaagaaaatgccggacgagtggagaaga 11592650  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  11592651 agcactttaattc 11592663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 33351325 - 33351114
Alignment:
Q  40 aaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgact 139  Q
    ||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||||||||| || ||| || | |||| |||  ||| ||||||||||  |      
T  33351325 aaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgggtagtgacgaggcagttgggccggacaacatacctatc 33351226  T
Q  140 gaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaa 239  Q
    ||||||||||| |||||||| |||||| | | |||||||||| | || ||||||||||||||||| ||||| |||||||||||||| ||| ||| |||||    
T  33351225 gaagtgtggaagagtcttggcgatagagggactgtgtggctcgcaaacctttttaacgagattataaggacgaagaaaatgtcggacgagtggagaagaa 33351126  T
Q  240 acactttaattc 251  Q
     |||||||||||    
T  33351125 gcactttaattc 33351114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 24178709 - 24178532
Alignment:
Q  46 taactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaagtg 145  Q
    |||||| ||| || |||||||  | |||| ||| ||||||||| |||||||| ||| |||||| ||||| |||  |||  |||||||||  |  ||||||    
T  24178709 taactattattgtcggattcagtagcacgaggtgaaagaagcaatgaaaaggatgactaatggaaaggcagttgggccgaacaacatacatatcgaagtg 24178610  T
Q  146 tggaaaa-gtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtc 222  Q
    || |||| ||||||| |||||| |||||||||||||||| |||||||| || |||||||||||||| |||||||||||    
T  24178609 tgaaaaaagtcttggcgatagaggaattgtgtggctcacaaaacttttcaatgagattatgaggacgaagaaaatgtc 24178532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 8228776 - 8228716
Alignment:
Q  190 ttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaatt 250  Q
    |||||||||||||| |||  |||||||||| || |||||   |||||||||||||||||||    
T  8228776 ttttaacgagattaagagatcaaagaaaatctcagatgattagaaaagaaacactttaatt 8228716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 251
Target Start/End: Original strand, 8179554 - 8179767
Alignment:
Q  38 tgaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactga 137  Q
    ||||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||||||||| ||| || ||||||||| |||  ||| ||||||||||  |    
T  8179554 tgaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgattagtggcaaggcagttgggccggacaacataccta 8179653  T
Q  138 ctgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaag 237  Q
      |||||||||||||||||| | |||||| | |||||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||| ||| |||    
T  8179654 tcgaagtgtggaaaagtcttagcgatagagggattgtgtggctcacaaacctttttaacgagattatgaggacgaagaaaatgtcagacgagtggagaag 8179753  T
Q  238 aaacactttaattc 251  Q
    || |||||||||||    
T  8179754 aagcactttaattc 8179767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 37280893 - 37281080
Alignment:
Q  62 attcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaagtgtggaaaagtcttggag 161  Q
    ||||||||||  | |||||||||||| |  |||| | ||||||||| |||||| |||  ||||||||||||||  | ||||||||||||||||||||||     
T  37280893 attcaagaacttgaggtaaaagaagcgtataaaaagatgagtaatgacaaggcagttgggccagacaacatacatattgaagtgtggaaaagtcttggat 37280992  T
Q  162 atagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaatt 250  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||  ||| ||||||| ||||||||    
T  37280993 atagaggaattgtgtggctcaccaaacattttaacgagactatgaggac-aacaaaatgtcggatgaatggagaagaaacgctttaatt 37281080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 11503038 - 11502822
Alignment:
Q  33 agggttgaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacat 132  Q
    ||||| |||||| |||||| ||| ||  ||||| ||||||||||||||||||| |||||||| || ||||||||| ||| ||  ||  || |||||| ||    
T  11503038 agggtcgaaactataactactattgtcagattctagaacacggggtaaaagaaacattgaaa-ggatgagtaatgacaatgcaattgggctagacaagat 11502940  T
Q  133 actgactgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgagggg 232  Q
    |   | |||||||||||||||||||||||||| | |||| |||||||||||||| |||| |||| |||||||||||||||| |||||||  |||||| ||    
T  11502939 atctattgaagtgtggaaaagtcttggagataaaggaatagtgtggctcaccaatctttctaactagattatgaggacaaataaaatgttcgatgagtgg 11502840  T
Q  233 aaaagaaacactttaatt 250  Q
    | ||||||||||||||||    
T  11502839 agaagaaacactttaatt 11502822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 28409700 - 28409911
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| |||||| |||||| ||||||||| ||||| |||||||||| ||||||||| | | |||||| |||||||  || || ||||||  ||||  |     
T  28409700 gaaactataactattatcgtaggattcaagcacacgaggtaaaagaaacattgaaaatgattagtaattgcaaggcaattgagtcagacagtataccaat 28409799  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
    | |||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||  ||||||||| |||  ||||||| | ||||||  ||| ||||    
T  28409800 tcaagtgtggaaaagtctcgaagatagaagaattgtgtggttcaccgaactttttaataagattatgaagac--agaaaatattggatgattggagaaga 28409897  T
Q  239 aacactttaattct 252  Q
    | ||||||||||||    
T  28409898 agcactttaattct 28409911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 13148185 - 13148284
Alignment:
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||| || |||||| | |||||| ||||||||| ||||||| ||||||| ||| ||||    
T  13148185 tgaagtgtggaaaagtcttggagatataagaatcatgtggctcacc-aattttttagcaagattacgaggacaaataaaatgttggatgagtggataaga 13148283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 7136055 - 7135945
Alignment:
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
    |||||||  ||||||||||||||||||| | |||| || || |||||||||||||||  | ||||||||| ||||| ||||  || ||||| ||||||||    
T  7136055 tgaagtgcagaaaagtcttggagatagaggcattgagtagcccaccaaactttttaa-taaattatgaggtcaaagcaaataacgaatgagtggaaaaga 7135957  T
Q  239 aacactttaatt 250  Q
     |||||||||||    
T  7135956 tacactttaatt 7135945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 24584977 - 24584917
Alignment:
Q  191 tttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaattc 251  Q
    |||||||||||||||| ||| |||||||| || ||  || | |||||||||||||||||||    
T  24584977 tttaacgagattatgaagacgaagaaaatttcagaccagtgaaaaagaaacactttaattc 24584917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 225
Target Start/End: Original strand, 9257864 - 9258049
Alignment:
Q  40 aaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgact 139  Q
    ||||| |||| | |||||| |||||||||| |||   ||||| ||||||||||||||| |||||||||||||||| |||  ||||||||||||||| | |    
T  9257864 aaactataacgattatcgtcggattcaagagcacaaagtaaaggaagcattgaaaaggatgagtaatggcaaggcagttgggccagacaacatacttatt 9257963  T
Q  140 gaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcgga 225  Q
    |   ||||||||||||||||||||||| | ||||||||| ||||||||   |||||||||||| ||||||| ||||||||||||||    
T  9257964 gttatgtggaaaagtcttggagatagagggattgtgtggatcaccaaaaaatttaacgagattgtgaggacgaagaaaatgtcgga 9258049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 3368523 - 3368714
Alignment:
Q  37 ttgaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactg 136  Q
    |||||||| |||||| |||||| ||||||||||||||   | |||| ||   ||| ||||| |||||||||||||||  ||| |||||||||||||||      
T  3368523 ttgaaactataactattatcgtcggattcaagaacacaaagcaaaataaatgttggaaaggatgagtaatggcaaggatgttgagccagacaacatacca 3368622  T
Q  137 actgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatga 228  Q
    | |||||| |  |||||| |||||| |||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| | ||||||    
T  3368623 attgaagtatataaaagtattggaggtagaggaattgtgtggctcaccgaacttttaaacgagattataaggacaaagaaaatattggatga 3368714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 51449225 - 51449017
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || |||||| |||||||||| |||| ||| | |||||| ||| ||||| |||||| ||||||||| |||  ||| ||||||||||  |     
T  51449225 gaaactataattattatcgtcggattcaagagcacgaggttagagaagcgttggaaaggatgagtagtggcaaggcagttgggccggacaacatacctat 51449126  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
     ||||||||||| |||||||| |||||| | |||||||||||||| || ||||||    ||||||||||||| ||||||||| |||| ||| ||| ||||    
T  51449125 cgaagtgtggaagagtcttggcgatagagggattgtgtggctcacaaaccttttt----agattatgaggacgaagaaaatgccggacgagtggagaaga 51449030  T
Q  239 aacactttaattc 251  Q
    |||||||||||||    
T  51449029 aacactttaattc 51449017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 38848964 - 38849076
Alignment:
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
    ||||| || ||| ||| |||| || ||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||| ||| ||||    
T  38848964 tgaagagttgaagagttttggcgacagaggaattgtgtggctcacaaaactttttaacgagattataaggacgaagaaaatatcggacgagtggagaaga 38849063  T
Q  239 aacactttaattc 251  Q
    |||||||||||||    
T  38849064 aacactttaattc 38849076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 48252473 - 48252580
Alignment:
Q  99 tgagtaatggcaaggcggttaagccagacaacatactgactgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacga 198  Q
    |||| |||||||||| ||| |||  || ||||||||  | ||||||||||||| |||||||||||| | | ||||  || ||||||||| ||||||||||    
T  48252473 tgagcaatggcaaggtggtcaagttaggcaacatacctattgaagtgtggaaaggtcttggagataaaggcattggatgactcaccaaa-tttttaacga 48252571  T
Q  199 gattatgag 207  Q
     ||||||||    
T  48252572 aattatgag 48252580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 48624047 - 48623835
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| |||||| |||||| |||||||||| |||| ||| | |||||| ||||||||| |||||| ||||||||| |||  ||| ||||||||||  |     
T  48624047 gaaactataactattatcgtcggattcaagagcacgaggttatagaagcgttgaaaaggatgagtagtggcaaggcagttgggccggacaacatacctat 48623948  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
     ||||||||||| |||||||| |||||| | |||||||||||||| || ||||||||  ||||||||||||  |||||||||||| ||||| ||| || |    
T  48623947 cgaagtgtggaagagtcttggcgatagagggattgtgtggctcacaaacctttttaattagattatgaggattaagaaaatgtcgtatgagtggagaata 48623848  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  48623847 agcactttaattc 48623835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 23907822 - 23907610
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || || ||| |||||||||| |||| ||| | |||||| ||||||||| ||| || ||||||||| |||  ||  ||||||||||  |     
T  23907822 gaaactataattattaccgtcggattcaagagcacgaggttagagaagcgttgaaaaggatgattagtggcaaggcagttgggctggacaacatacctat 23907723  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
     ||||||||||| |||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||||  ||| ||| ||| ||||    
T  23907722 cgaagtgtggaagagtcttggcgatagagggattgtgtggctcaccaacctttttaacgagattatgaggacgaagaaaatgctggacgagtggagaaga 23907623  T
Q  239 aacactttaattc 251  Q
    | |||||||||||    
T  23907622 agcactttaattc 23907610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 251
Target Start/End: Complemental strand, 16001436 - 16001250
Alignment:
Q  63 ttcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaagtgtggaaaagtcttggaga 162  Q
    ||||||| |||| |||||||||||| ||||||||| ||| ||||| |||| | ||| || |  || ||||||     |||||||||||||||||||||||    
T  16001436 ttcaagagcacgaggtaaaagaagcgttgaaaaggatgattaatgacaagacagttgagtcgcacgacatacctttcgaagtgtggaaaagtcttggaga 16001337  T
Q  163 tagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaattc 251  Q
    |||  ||||||||||| ||||||||||||||||||||||||||||||| ||||||||  |||| ||| ||| |||   |||||||||||    
T  16001336 tag--gaattgtgtgggtcaccaaactttttaacgagattatgaggacgaagaaaataccggacgagtggagaagctgcactttaattc 16001250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 56224527 - 56224715
Alignment:
Q  41 aactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaac-atactgact 139  Q
    |||| |||||| ||| |||||||||||||||| | |||||||||||| |||||| || ||||||||| |||  | |||  |||| ||||  ||||  | |    
T  56224527 aactataactactattgttggattcaagaacatgaggtaaaagaagcgttgaaa-ggatgagtaatgacaaatcagttgggccaaacaaatatacctaat 56224625  T
Q  140 gaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgag 229  Q
    ||||||||||||||| || |||||| | || ||||||| |||||| |||||||||| |||||||||| ||||||||||||||| ||||||    
T  56224626 gaagtgtggaaaagttttcgagatatatgagttgtgtgactcacctaactttttaatgagattatgaagacaaagaaaatgtcagatgag 56224715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 27451683 - 27451505
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| |||||| |||||| | |||||||| |||| ||| ||| |||||||||||||| |||||||||||||||  |||  ||| || |||||||  |     
T  27451683 gaaactataactattatcgtcgaattcaagagcacgaggtgaaaaaagcattgaaaaggatgagtaatggcaaggaagttgggccggataacatacctat 27451584  T
Q  139 tgaagtgtggaaaagtcttggagatagaa-gaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaa 216  Q
     |||||||||||||||||||| |||| || |||||||||||||||| |||   || ||||||||||||| ||| |||||    
T  27451583 cgaagtgtggaaaagtcttggcgatataaggaattgtgtggctcacaaaaaaattcaacgagattatgaagacgaagaa 27451505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 55769863 - 55769788
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggc 114  Q
    |||||| |||||| |||||| ||||||||||| ||| |||||||||||  |||| |||| ||||||||||||||||    
T  55769863 gaaactataactactatcgtcggattcaagaatacgaggtaaaagaagagttgacaaggatgagtaatggcaaggc 55769788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 55834119 - 55834044
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggc 114  Q
    |||||| |||||| |||||| ||||||||||| ||| |||||||||||  |||| |||| ||||||||||||||||    
T  55834119 gaaactataactactatcgtcggattcaagaatacgaggtaaaagaagagttgacaaggatgagtaatggcaaggc 55834044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 55769732 - 55769696
Alignment:
Q  170 attgtgtggctcaccaaactttttaacgagattatga 206  Q
    |||| |||||||||||||||||||||||| |||||||    
T  55769732 attgggtggctcaccaaactttttaacgaaattatga 55769696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 55833988 - 55833952
Alignment:
Q  170 attgtgtggctcaccaaactttttaacgagattatga 206  Q
    |||| |||||||||||||||||||||||| |||||||    
T  55833988 attgggtggctcaccaaactttttaacgaaattatga 55833952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 140 - 251
Target Start/End: Complemental strand, 5260667 - 5260556
Alignment:
Q  140 gaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaa 239  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  5260667 gaagtgtggaaaagtcttggcgatagaggaattgtgtggctcacaaaacttttcaacgagattatgaggacaaagaaaatgccggacgagtggagaagaa 5260568  T
Q  240 acactttaattc 251  Q
     ||| |||||||    
T  5260567 tcaccttaattc 5260556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 9705661 - 9705772
Alignment:
Q  140 gaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaa 239  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||||||||||||| || ||||||||||| || ||| ||| |||||    
T  9705661 gaagtgtggaaaagtcttggcgatagaggaattgtgtggctcacaaaacttttcaacgagattatgagaacgaagaaaatgtccgacgagtggagaagaa 9705760  T
Q  240 acactttaattc 251  Q
     ||| |||||||    
T  9705761 gcaccttaattc 9705772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 20429155 - 20428976
Alignment:
Q  41 aactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactg 140  Q
    |||| |||||| |||||| ||||||| || ||||  || |||||| | ||||||||| |||||||||||||||| |||  ||| || |||||||  |  |    
T  20429155 aactataactattatcgtcggattcaggagcacgaagtgaaagaaccgttgaaaaggatgagtaatggcaaggcagttgggcccgaaaacatacctatcg 20429056  T
Q  141 aagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatg 220  Q
     |||||||||||||| ||| ||| || |||||||||||||||| ||||| || ||||||||||||||||| |||||||||    
T  20429055 gagtgtggaaaagtcatggcgatggaggaattgtgtggctcacaaaactgttcaacgagattatgaggacgaagaaaatg 20428976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 26290646 - 26290757
Alignment:
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaaga 238  Q
    |||||||| ||||| | | |||| |||| | ||||||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||| ||| | ||    
T  26290646 tgaagtgtagaaaattttgggagttagaggtattgtgtggctaaccaaactttttaacgagattatgaggacaatgaaaatgcaggatgagtggagatga 26290745  T
Q  239 aacactttaatt 250  Q
    ||||||||||||    
T  26290746 aacactttaatt 26290757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 3629153 - 3629233
Alignment:
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaat 219  Q
    |||||| ||||||| ||||||||||||| |||||| || |||||||||||||||||| || ||||||||||||||||||||    
T  3629153 tgaagtatggaaaaatcttggagatagatgaattgggtagctcaccaaactttttaatgaaattatgaggacaaagaaaat 3629233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 6082300 - 6082363
Alignment:
Q  188 ctttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaattc 251  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||| ||||| |||||||||||    
T  6082300 ctttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaagaagcactttaattc 6082363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 30242562 - 30242658
Alignment:
Q  148 gaaaagtcttggagatagaagaattgtgt-ggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacact 244  Q
    ||||| ||||||||||||| | ||| ||| |||||||||||||| ||||||| | |||||||| ||||||||||||| ||||| ||| ||||||||||    
T  30242562 gaaaaatcttggagatagaggcatt-tgtaggctcaccaaacttattaacgatactatgaggataaagaaaatgtcgaatgagtggagaagaaacact 30242658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 30243640 - 30243713
Alignment:
Q  179 ctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaacactttaattct 252  Q
    |||||||||||| ||||||| | |||||||| ||||||||||||| ||||| ||| ||||||||||||| ||||    
T  30243640 ctcaccaaacttattaacgatactatgaggataaagaaaatgtcgaatgagtggagaagaaacactttagttct 30243713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 6081210 - 6081351
Alignment:
Q  39 gaaactttaactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgac 138  Q
    |||||| ||| || |||||| |||||||||| || | ||| |  ||||| ||||||||| |||||| ||||||||| |||  |||||| |||||||  |     
T  6081210 gaaactataattattatcgtcggattcaagagcatgaggttagggaagcgttgaaaaggatgagtagtggcaaggcagttgggccagaaaacatacctat 6081309  T
Q  139 tgaagtgtggaaaagtcttggagatagaagaattgtgtggct 180  Q
      |||||||||| |||||||| |||||| | |||||||||||    
T  6081310 caaagtgtggaagagtcttggcgatagagggattgtgtggct 6081351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 14167852 - 14167701
Alignment:
Q  79 aaaagaagcattgaaaagggtgagtaatggcaaggcg-gttaagccagacaacatactgactgaagtgtggaaaagtcttggagatagaagaattgtgtg 177  Q
    ||||||||| ||||||||| |||||||||| |||    |||  ||| || |||||| ||| |||||||||||||||| ||||||||||| | | |  ||     
T  14167852 aaaagaagcgttgaaaaggatgagtaatggaaagaaaagttgggcctgaaaacatattgattgaagtgtggaaaagttttggagatagaggcaataagta 14167753  T
Q  178 gctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgag 229  Q
    |||| ||||| |||| ||| | || ||||| ||||||| |||||| ||||||    
T  14167752 gctctccaaaattttaaacaaaatcatgagtacaaagagaatgtcagatgag 14167701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 13675 - 13565
Alignment:
Q  141 aagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgaggggaaaagaaa 240  Q
    |||||||||| |||||||| ||||||  ||||||||||||||| | | |||||||||||||||||||||| |||||||||||||| ||| ||| || |||    
T  13675 aagtgtggaagagtcttggcgatagagaaattgtgtggctcacaatattttttaacgagattatgaggacgaagaaaatgtcggacgagtggagaacaaa 13576  T
Q  241 cactttaattc 251  Q
    |||||||||||    
T  13575 cactttaattc 13565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 25642 - 25538
Alignment:
Q  124 agacaacatactgactgaagtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcg 223  Q
    |||||||||||| | ||||||||||||||||||| ||| |||| |||||||||||| |||||| | ||||||| ||||  | || ||||||||||||| |    
T  25642 agacaacatacttattgaagtgtggaaaagtcttagaggtagaggaattgtgtggcacaccaagcgttttaacaagatagtaagaacaaagaaaatgttg 25543  T
Q  224 gatga 228  Q
    |||||    
T  25542 gatga 25538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 52040 - 52125
Alignment:
Q  143 gtgtggaaaagtcttggagatagaagaattgtgtggctcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatga 228  Q
    |||||||||| |||||| || ||| |||||| ||| ||||| |||  ||||||||||| ||||||||  ||||||||| |||||||    
T  52040 gtgtggaaaattcttggcgaaagaggaattgggtgactcacaaaaaattttaacgagagtatgaggatgaagaaaatgccggatga 52125  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 74847 - 74760
Alignment:
Q  47 aactaatatcgttggattcaagaacacggggtaaaagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatac 134  Q
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T  74847 aactactatcgtcagattcaagagcacaaggtaaaagaagtgttgaaaaggatgagtaatggcaagacagttgggtcagacaacatac 74760  T

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