View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_5 (Length: 507)
Name: NF0886_low_5
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 22016726 - 22016398
Alignment:
| Q |
1 |
taaggttgaatttcatccagacaattcatctgaggaggcttcggtaaatagcgtagaacacaaaaatcgatcaggaattgcatagtaagagataatttca |
100 |
Q |
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| T |
22016726 |
taaggttgaatttcatccagacaattcatctgaggaggcttcggtaaatagcgtagaacacaaaaatcgatcaggaattgcatagtaagagataatttca |
22016627 |
T |
|
| Q |
101 |
aattcactatgctaagtcatcacaaagcagcacttacaaaagtaaccttatagcaaatccaaagttagaagtgtagcaaagtggctatgttacactcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22016626 |
aattcactatgctaagtcatcacaaagcagcacttacaaaagtaaccttatagcaaatccaaagttagaagtgtagcaaagtggctatgttacactcctt |
22016527 |
T |
|
| Q |
201 |
gattaataaacacaaatgtgcagaatggcaaaattattatagcactattaaagccattaagggagactattaaagccatatttctagaggatgtgaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
22016526 |
gattaataaacacaaatgtgcagaatggcaaaattattatagcactattaaagcca----------------------tatttctagatgatgtgaaact |
22016449 |
T |
|
| Q |
301 |
aaagtcaaaacacactcttcacaccagcacaacaaagatactagaggaagc |
351 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22016448 |
aaagtcaaaacacactcttcacaccagcacaacaaagatactagaggaagc |
22016398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 349 - 478
Target Start/End: Complemental strand, 22016363 - 22016230
Alignment:
| Q |
349 |
agctagaggtggattgaaactcaggcagctttt-ccaacacggtatgtatatgctaggagggaaaacaactgaacaacaacaaaaccttttcttactagt |
447 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22016363 |
agctagaggtggattgaaactcaggcagctttttccaacacagtacgtacatgctaggagggaaaacaactgaacaacaacaaaaccttttctcactagt |
22016264 |
T |
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| Q |
448 |
gggcttaactaca---atcaaaacctgtcataaa |
478 |
Q |
| |
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|||||||||||| ||||||||||||| |||| |
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| T |
22016263 |
cggcttaactacagccatcaaaacctgtcttaaa |
22016230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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