View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_50 (Length: 251)
Name: NF0886_low_50
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 48920101 - 48920343
Alignment:
| Q |
1 |
tgagctgaagctccatatttctgtttgaactctaatagccggaaaatcctctccaaagcattaagagacttttcctgcaatccgggagaaggggaaccga |
100 |
Q |
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| T |
48920101 |
tgagctgaagctccatatttctgtttgaactctaatagccggaaaatcctctccaaagcattaagagacttttcctgcaatccgggagaaggggaaccga |
48920200 |
T |
|
| Q |
101 |
gaaatcttattattagtggtatgacattttcatctgcaagcactttactaccactctgtagcttttccccatcaattaaagttagaagagcatctaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48920201 |
gaaatcttattattagtggtatgacattttcatctgcaagcactttactaccactctgtagcttttccccatcaattaaagttagaagagcatctaaaga |
48920300 |
T |
|
| Q |
201 |
attctcacacactccaagatcagagtccccaagagtctctgct |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48920301 |
attctcacacactccaagatcagagtccccaagagtctttgct |
48920343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9537172 - 9536939
Alignment:
| Q |
1 |
tgagctgaagctccatatttctgtttgaactctaatagccggaaaatcctctccaaagcattaagagacttttcctgcaatccgggagaaggggaaccga |
100 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||| | |||||||| |||||||||| ||||||||||| ||||| || |||||| |||| | |
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| T |
9537172 |
tgagctgaggctccatataactgtttgaactctgctagctgaaaaatcctttccaaagcatgtagagacttttcttgcaacccaagagaagtagaactaa |
9537073 |
T |
|
| Q |
101 |
gaaatcttattattagtggtatgacattttcatctgcaagcactttactaccactctgtagcttttccccatcaattaaagttagaagagcatctaaaga |
200 |
Q |
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||||| ||||||||| |||||| ||||| | | ||||||||||||| |||||||| ||| ||||| || ||||| || |||| | |||||| ||||| |
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| T |
9537072 |
gaaattttattattaatggtattgcatttgctttagcaagcactttaccaccactctctagtttttcaccttcaatcaatgttaataaagcatccaaaga |
9536973 |
T |
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| Q |
201 |
attctcacacactccaagatcagagtccccaaga |
234 |
Q |
| |
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| |||||| |||||| |||||| || |||||| |
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| T |
9536972 |
agcctcacaaactccataatcagattctccaaga |
9536939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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