View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0886_low_55 (Length: 250)
Name: NF0886_low_55
Description: NF0886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0886_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 28820650 - 28820421
Alignment:
| Q |
8 |
gatgaaacgtccatgctgatgaatacttgtcaggatgaactcaacagtcttcatggaaatgaaggtatgcataatgttatgcattcttctctttagtatt |
107 |
Q |
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| T |
28820650 |
gatgaaacgtccatgctgatgaatacttgtcaggatgaactcaacagtcttcacggaaatgaaggtatgcataatgttatgcattcttctctttagtatt |
28820551 |
T |
|
| Q |
108 |
gtttgaattttgattccaatggtcaatagtctagattgtctagctaaacttaaaggaacttgccactacttattatgttatatgatgttactgattcagc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28820550 |
gtttgaattttgattccaatggtcaatagtctagattgtctagctaaacttaaaggaacttgccactacttattatgttatatgatg-tactgattcagc |
28820452 |
T |
|
| Q |
208 |
tgacattggatcaaaggggatcagcaacagc |
238 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28820451 |
tgacattggatcaaaggggatcagcaacagc |
28820421 |
T |
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