View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0888_high_10 (Length: 245)

Name: NF0888_high_10
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0888_high_10
NF0888_high_10
[»] chr8 (18 HSPs)
chr8 (46-241)||(3046446-3046641)
chr8 (137-241)||(20289573-20289677)
chr8 (137-241)||(21076203-21076307)
chr8 (47-107)||(10861483-10861543)
chr8 (137-241)||(17068408-17068512)
chr8 (137-241)||(17579761-17579865)
chr8 (137-241)||(29054794-29054900)
chr8 (161-239)||(10861549-10861627)
chr8 (148-241)||(17630914-17631007)
chr8 (47-107)||(17068517-17068577)
chr8 (47-107)||(17579696-17579756)
chr8 (148-241)||(34964500-34964593)
chr8 (47-107)||(29054905-29054965)
chr8 (47-107)||(34964424-34964484)
chr8 (53-107)||(17630844-17630898)
chr8 (47-108)||(20289681-20289742)
chr8 (47-108)||(21076311-21076372)
chr8 (54-104)||(44718251-44718301)
[»] chr5 (8 HSPs)
chr5 (50-241)||(6665905-6666096)
chr5 (47-239)||(32659119-32659312)
chr5 (137-241)||(8871477-8871581)
chr5 (137-241)||(13854433-13854537)
chr5 (53-107)||(8871586-8871640)
chr5 (47-100)||(13854369-13854422)
chr5 (169-241)||(36606408-36606480)
chr5 (47-107)||(36606480-36606540)
[»] chr3 (17 HSPs)
chr3 (47-241)||(22976432-22976626)
chr3 (137-241)||(42864503-42864607)
chr3 (136-240)||(4533704-4533808)
chr3 (137-241)||(959068-959172)
chr3 (137-241)||(53330430-53330534)
chr3 (137-241)||(53334114-53334218)
chr3 (137-241)||(53337791-53337895)
chr3 (47-107)||(25041681-25041741)
chr3 (137-241)||(39580126-39580230)
chr3 (47-107)||(39580235-39580295)
chr3 (137-241)||(39674412-39674514)
chr3 (47-107)||(21869196-21869256)
chr3 (137-241)||(25041572-25041676)
chr3 (47-107)||(959177-959237)
chr3 (47-107)||(4533812-4533872)
chr3 (57-107)||(29360075-29360125)
chr3 (54-90)||(41530371-41530407)
[»] chr7 (19 HSPs)
chr7 (47-238)||(22293075-22293265)
chr7 (74-241)||(45280981-45281149)
chr7 (158-241)||(30947793-30947876)
chr7 (137-241)||(19927994-19928098)
chr7 (137-233)||(26279685-26279781)
chr7 (137-234)||(40819671-40819768)
chr7 (169-241)||(22205104-22205176)
chr7 (169-241)||(22229563-22229635)
chr7 (47-105)||(25443942-25444000)
chr7 (47-107)||(22204998-22205058)
chr7 (47-107)||(22229681-22229741)
chr7 (137-237)||(25443835-25443935)
chr7 (47-106)||(30947902-30947961)
chr7 (47-107)||(19927929-19927989)
chr7 (47-107)||(26279620-26279680)
chr7 (54-108)||(26244664-26244718)
chr7 (47-107)||(40819606-40819666)
chr7 (47-91)||(45281169-45281213)
chr7 (204-241)||(37243006-37243043)
[»] chr1 (5 HSPs)
chr1 (46-241)||(33369010-33369200)
chr1 (52-108)||(46397777-46397833)
chr1 (137-241)||(46397837-46397939)
chr1 (178-241)||(23206064-23206127)
chr1 (59-103)||(22150348-22150392)
[»] chr6 (4 HSPs)
chr6 (137-241)||(21112321-21112425)
chr6 (137-241)||(8862263-8862367)
chr6 (47-107)||(21112430-21112490)
chr6 (47-107)||(8862372-8862432)
[»] chr4 (3 HSPs)
chr4 (137-241)||(54260358-54260462)
chr4 (47-107)||(54260467-54260527)
chr4 (178-241)||(26261266-26261329)
[»] chr2 (7 HSPs)
chr2 (47-108)||(14811617-14811678)
chr2 (137-241)||(14811509-14811613)
chr2 (53-107)||(14314069-14314123)
chr2 (54-108)||(13043510-13043564)
chr2 (135-241)||(14314125-14314238)
chr2 (126-178)||(13043614-13043666)
chr2 (177-241)||(29081149-29081213)
[»] scaffold0017 (2 HSPs)
scaffold0017 (137-241)||(37791-37895)
scaffold0017 (47-107)||(37726-37786)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 46 - 241
Target Start/End: Original strand, 3046446 - 3046641
Alignment:
Q  46 taacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaannnnnnncccaatttgagagaagaaccaaagaaacat 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||    
T  3046446 taacacctttgtctaatgttgactacttaatatttaacactaatttatatcaaaaacaaacaatttttttcccaatttgagagaagaaccaaagaaacat 3046545  T
Q  146 ggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3046546 ggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 3046641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 20289677 - 20289573
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||| ||| |||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  20289677 aagaaacataacattagagagaagagaaacagagtagaattcaattagtgttaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 20289578  T
Q  237 tattt 241  Q
    |||||    
T  20289577 tattt 20289573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 21076307 - 21076203
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  21076307 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 21076208  T
Q  237 tattt 241  Q
    |||||    
T  21076207 tattt 21076203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 10861483 - 10861543
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10861483 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 10861543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 17068512 - 17068408
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||| ||||||||  |||||||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  17068512 aagaaacataacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 17068413  T
Q  237 tattt 241  Q
    |||||    
T  17068412 tattt 17068408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 17579761 - 17579865
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||| ||||||||  |||||||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  17579761 aagaaacataacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 17579860  T
Q  237 tattt 241  Q
    |||||    
T  17579861 tattt 17579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 29054900 - 29054794
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagtta--tcgttatgtggtgacgagaaac 234  Q
    |||||||||  ||||||||  ||||||||||||||||||||||||  |||||||||| |||||||| |||||| ||  | | ||||||||||||||||||    
T  29054900 aagaaacataacattagagagaagagaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattttgctatgtggtgacgagaaac 29054801  T
Q  235 cctattt 241  Q
    |||||||    
T  29054800 cctattt 29054794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 10861549 - 10861627
Alignment:
Q  161 agaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctat 239  Q
    |||||||||||||||||||||  |||||||||| |||||||| |||||| ||| | |||||||||||||||||||||||    
T  10861549 agaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctat 10861627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 17630914 - 17631007
Alignment:
Q  148 cattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| | ||| |||||||||||||||||||||    
T  17630914 cattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatttggtgacgagaaaccctattt 17631007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 17068577 - 17068517
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  17068577 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 17068517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 17579696 - 17579756
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  17579696 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 17579756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 34964500 - 34964593
Alignment:
Q  148 cattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    ||||||||  ||||||||||||||||||||||||    |||||||| |||||||| |||||| ||| | |||| ||||||||||||||||||||    
T  34964500 cattagagagaagagaaacatagtagaattcaatcaaaggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccctattt 34964593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 29054965 - 29054905
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  29054965 aacatctttgtctaatgttgactacttaaccgttaacactaatttatatcgaaaacaaaca 29054905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 34964424 - 34964484
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  34964424 aacatctttgtctaatgttgactacttaacagttaacactaatttacatcgaaaacaaaca 34964484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 17630844 - 17630898
Alignment:
Q  53 tttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  17630844 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaactaaca 17630898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 20289742 - 20289681
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaa 108  Q
    |||| |||||||||||||| | |||||||   ||||||||||||||||||||||||||||||    
T  20289742 aacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaa 20289681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 21076372 - 21076311
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaa 108  Q
    |||| |||||||||||||| | |||||||   ||||||||||||||||||||||||||||||    
T  21076372 aacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaacaaacaa 21076311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 44718251 - 44718301
Alignment:
Q  54 ttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaa 104  Q
    |||||||||||||||||||||||| ||||||||| || | || ||||||||    
T  44718251 ttgtctaatgttgactacttaatagttaacactatttgaaattgaaaacaa 44718301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 241
Target Start/End: Complemental strand, 6666096 - 6665905
Alignment:
Q  50 acctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaannnnnnncccaatttgagagaagaaccaaagaaacatggca 149  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||        ||||||| | |||||||||  |||||||||||||    
T  6666096 acctttgtctaatgttgactacttactagttaacactaatttatatcgaaaacaaacagtttttttcccaattagtgagaagaacataagaaacatggca 6665997  T
Q  150 ttagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  6665996 ttagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccctattt 6665905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 239
Target Start/End: Complemental strand, 32659312 - 32659119
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaa--caaacaannnnnnncccaatttgagagaagaaccaaagaaaca 144  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||  ||||||        ||||||| |||||||||||  ||||||||    
T  32659312 aacacctttgtctaatgttgactacttaatagttaacactaatttagataaaaaaaacaaaca-gctttttcccaattagagagaagaacagaagaaaca 32659214  T
Q  145 tggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctat 239  Q
    |  ||||||||  | ||||||| ||||||||||||||     ||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  32659213 taacattagagggaggagaaacttagtagaattcaatcataagtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaaccctat 32659119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 8871581 - 8871477
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  ||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  8871581 aagaaacataacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 8871482  T
Q  237 tattt 241  Q
    |||||    
T  8871481 tattt 8871477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 13854433 - 13854537
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| ||||||||  ||||||||| | ||||||||||||||||||||    
T  13854433 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagataatagttattgctatgtggtgacgagaaaccc 13854532  T
Q  237 tattt 241  Q
    |||||    
T  13854533 tattt 13854537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 8871640 - 8871586
Alignment:
Q  53 tttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  8871640 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 8871586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 13854369 - 13854422
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaa 100  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||||||    
T  13854369 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaa 13854422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 36606480 - 36606408
Alignment:
Q  169 agtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||||||||||||  ||| |||||| |||||||| |||||| ||| | |||||||||||||||||||||||||    
T  36606480 agtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctattt 36606408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 36606540 - 36606480
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | |||| ||||||||||||  ||||||||||    
T  36606540 aacatctttgtctaatgttgactacttaacagttaatactaatttatattaaaaacaaaca 36606480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 47 - 241
Target Start/End: Original strand, 22976432 - 22976626
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaannnnnnncccaatttgagagaagaaccaaagaaacatg 146  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||        ||||||| |||||||||||  ||||||||||    
T  22976432 aacacctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaataaacagtttttttcccaattagagagaagaacagaagaaacatg 22976531  T
Q  147 gcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||||||||  || ||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||    
T  22976532 gcattagagagaaaagaaacatagtagaattcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaaccctattt 22976626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 42864607 - 42864503
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  ||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  42864607 aagaaacataacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 42864508  T
Q  237 tattt 241  Q
    |||||    
T  42864507 tattt 42864503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 4533808 - 4533704
Alignment:
Q  136 aaagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaacc 235  Q
    ||||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| |||||||||||||||||||||    
T  4533808 aaagaaacataacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaacc 4533709  T
Q  236 ctatt 240  Q
    |||||    
T  4533708 ctatt 4533704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 959172 - 959068
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| |||   ||||||||||||||||||||    
T  959172 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaaccc 959073  T
Q  237 tattt 241  Q
    |||||    
T  959072 tattt 959068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 53330430 - 53330534
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||| |||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  53330430 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 53330529  T
Q  237 tattt 241  Q
    |||||    
T  53330530 tattt 53330534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 53334114 - 53334218
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||| |||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  53334114 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 53334213  T
Q  237 tattt 241  Q
    |||||    
T  53334214 tattt 53334218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 53337791 - 53337895
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||| |||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  53337791 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 53337890  T
Q  237 tattt 241  Q
    |||||    
T  53337891 tattt 53337895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 25041741 - 25041681
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  25041741 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 25041681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 39580230 - 39580126
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| | | |||| |||||| ||| | ||||||||||||||||||||    
T  39580230 aagaaacataacattagagagaagagaaacaaagtagaattcaatcagtggtaatggttggtagagagaatagctattgctatgtggtgacgagaaaccc 39580131  T
Q  237 tattt 241  Q
    |||||    
T  39580130 tattt 39580126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 39580295 - 39580235
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  39580295 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 39580235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 39674514 - 39674412
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||  |||||||||||||  |||||||||  |||||||| |||||| ||| | ||||||||||||||||||||    
T  39674514 aagaaacataacattagagagaagagaaacggagtagaattcaatcagtggtaatg--tagaagagagaatagctattgctatgtggtgacgagaaaccc 39674417  T
Q  237 tattt 241  Q
    |||||    
T  39674416 tattt 39674412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 21869256 - 21869196
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  21869256 aacatctttgtctaatgttgactacttaacagttaacactaatttatattgaaaacaaaca 21869196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 25041676 - 25041572
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| ||||||||| |||  |||||||||| || || || |||||| ||| | ||||||||||||||||||||    
T  25041676 aagaaacataacattagagagaagagaaacagagtagaatttaatcagtggtaatggttaaaaaagagaatagctattgctatgtggtgacgagaaaccc 25041577  T
Q  237 tattt 241  Q
    |||||    
T  25041576 tattt 25041572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 959237 - 959177
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| ||||||||||||||||||||||||   ||| |||||||||||||||||||||||||    
T  959237 aacatctttgtctaatgttgactacttaacggttatcactaatttatatcgaaaacaaaca 959177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 4533872 - 4533812
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| ||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||    
T  4533872 aacatctttgtctaatgttgactaattaacagttaacaataatttatatcgaaaacaaaca 4533812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 29360125 - 29360075
Alignment:
Q  57 tctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    ||||||||||||| ||| ||| |||||||||||||| ||||||||||||||    
T  29360125 tctaatgttgactgcttgatagttaacactaatttagatcgaaaacaaaca 29360075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 41530371 - 41530407
Alignment:
Q  54 ttgtctaatgttgactacttaatatttaacactaatt 90  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  41530371 ttgtctaatgttgactactttatagttaacactaatt 41530407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 22293265 - 22293075
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaannnnnnncccaatttgagagaagaaccaaagaaacatg 146  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||       |||||||  ||||||||||  | |||||||     
T  22293265 aacacatttgtctaatgttgactacttaatagttaacactaatttagatcaaaaacaaacaatttttt-cccaattaaagagaagaacagaggaaacata 22293167  T
Q  147 gcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaacccta 238  Q
    | |||||||  ||||||||||||||||||||  || ||||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||    
T  22293166 gtattagagagaagagaaacatagtagaatttgatcggtggtaatggttagaagagggaataactatcgttatatggtgacgagaaacccta 22293075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 45281149 - 45280981
Alignment:
Q  74 aatatttaacactaatttatatcgaaaacaaacaannnnnnncc-caatttgagagaagaaccaaagaaacatggcattagagcaaagagaaacatagta 172  Q
    |||| ||||||||||||||||||||||||||||||        | ||||| |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  45281149 aatagttaacactaatttatatcgaaaacaaacaattttttttctcaattagagagaagaacagaagaaacatgacattagagcaaagagaaacatagta 45281050  T
Q  173 gaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||| ||||||||| || ||| ||||||||||||||  ||||| | |||||||| ||||||||||||||    
T  45281049 gaatacaattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaaccctattt 45280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 30947876 - 30947793
Alignment:
Q  158 aagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||| | |||||||||||||||||||||||||    
T  30947876 aagagaaacatagtagaattcaatcggtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctattt 30947793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 19927994 - 19928098
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| | |||||||||||||||||||     
T  19927994 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacca 19928093  T
Q  237 tattt 241  Q
    |||||    
T  19928094 tattt 19928098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 26279685 - 26279781
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaa 233  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| |||||||||||||||||||    
T  26279685 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgttatgtggtgacgagaaa 26279781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 40819671 - 40819768
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaac 234  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| | ||||||||||||||||||    
T  40819671 aagaaacataacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 40819768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 22205104 - 22205176
Alignment:
Q  169 agtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    ||||||||||||| || |||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  22205104 agtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaaccctattt 22205176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 22229635 - 22229563
Alignment:
Q  169 agtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    ||||||||||||| || |||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  22229635 agtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaaccctattt 22229563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 25444000 - 25443942
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaa 105  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  25444000 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaa 25443942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 22204998 - 22205058
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  22204998 aacacttttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaaca 22205058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 22229741 - 22229681
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  22229741 aacacttttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaaca 22229681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 25443935 - 25443835
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| ||||| || |||||| ||| | |||||||||| |||||||||    
T  25443935 aagaaacataacattagagagaagagaaacagagtagaattcaatctgtggtaatggttagaaaagagaatagctattgatatgtggtgatgagaaaccc 25443836  T
Q  237 t 237  Q
    |    
T  25443835 t 25443835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 30947961 - 30947902
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaac 106  Q
    |||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  30947961 aacatctttgtctaatgttgactatttaacagttaacactaatttatatcgaaaacaaac 30947902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 19927929 - 19927989
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  19927929 aacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaacaaaca 19927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 26279620 - 26279680
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| ||||||| |||||||||||||||| | |||||| ||||||||||||||||||||||    
T  26279620 aacatctttgtccaatgttgactacttaacagttaacattaatttatatcgaaaacaaaca 26279680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 26244664 - 26244718
Alignment:
Q  54 ttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaa 108  Q
    |||||||||||||||||||||||| |||||||||||| | || ||||||||||||    
T  26244664 ttgtctaatgttgactacttaataattaacactaattgagattgaaaacaaacaa 26244718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 40819606 - 40819666
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||| |||||||||||||||||||   ||| |||||||||||||||||||||||||    
T  40819606 aacatctttatctaatgttgactacttaactgttatcactaatttatatcgaaaacaaaca 40819666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 45281213 - 45281169
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaattt 91  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||    
T  45281213 aacacatttgtctaatgttgactgcttaatagttaacactaattt 45281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 37243006 - 37243043
Alignment:
Q  204 gaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||||||||| | |||||||||||||||||||||||||    
T  37243006 gaatagttattgctatgtggtgacgagaaaccctattt 37243043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 33369200 - 33369010
Alignment:
Q  46 taacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaannnnnnncccaatttgagagaagaaccaaagaaacat 145  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| || ||||| || |||       ||||||| || ||||||||  |||||||||    
T  33369200 taacacctttgtctaatgttgactacttaatagttaacactattttagattgaaaa-aatcaatttttt-cccaattagaaagaagaacagaagaaacat 33369103  T
Q  146 ggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
     |||||||||   ||||||||| |||||||||||||  |||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  33369102 agcattagag---agagaaacagagtagaattcaatcagtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaacccaattt 33369010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 46397777 - 46397833
Alignment:
Q  52 ctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaa 108  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||    
T  46397777 ctttgtctaatgttgattacttaatagttaacaataatttatatcgaaaacaaacaa 46397833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 46397837 - 46397939
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  ||||||||||  |||||||||||| ||||||||||  | |||||| |||||  | | | ||||||||||||||||||||    
T  46397837 aagaaacataacattagagagaagagaaaca--gtagaattcaatcggtggtaatgattggaagagagaataactgttgatatgtggtgacgagaaaccc 46397934  T
Q  237 tattt 241  Q
    |||||    
T  46397935 tattt 46397939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 23206064 - 23206127
Alignment:
Q  178 caattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    ||||| |||||||||| |||||||||| ||| ||||||||  ||||||||||||| || |||||    
T  23206064 caattagtggtaatggttagaagaggggatacttatcgttcggtggtgacgagaacccatattt 23206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 22150348 - 22150392
Alignment:
Q  59 taatgttgactacttaatatttaacactaatttatatcgaaaaca 103  Q
    ||||||||||||||||||| |||||||||||| | || |||||||    
T  22150348 taatgttgactacttaataattaacactaattgagattgaaaaca 22150392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 21112425 - 21112321
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  21112425 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 21112326  T
Q  237 tattt 241  Q
    |||||    
T  21112325 tattt 21112321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 8862367 - 8862263
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||| ||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| | |||| |||||||||||||||    
T  8862367 aagaaacataacattatagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgcggtgacgagaaaccc 8862268  T
Q  237 tattt 241  Q
    |||||    
T  8862267 tattt 8862263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 21112490 - 21112430
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||    
T  21112490 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcaaaaacaaaca 21112430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 8862432 - 8862372
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| ||||||||||||||||| |||||| | ||| |||||||||||||||||||||||||    
T  8862432 aacatctttgtctaatgttgaccacttaacagttatcactaatttatatcgaaaacaaaca 8862372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 54260462 - 54260358
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  |||||||||| |||||||| |||||| ||| | ||||||||||||||||| ||    
T  54260462 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaacc 54260363  T
Q  237 tattt 241  Q
    |||||    
T  54260362 tattt 54260358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 54260527 - 54260467
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54260527 aacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaaca 54260467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 26261329 - 26261266
Alignment:
Q  178 caattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    |||||||||||||||| ||||||||||||||| ||| | |  ||||||||||||||| ||||||    
T  26261329 caattggtggtaatggttagaagagggaatagctatagctcggtggtgacgagaaactctattt 26261266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 14811678 - 14811617
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaa 108  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  14811678 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaacaa 14811617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 14811613 - 14811509
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||| | |||||||||||||  |||||||||| |||||||| |||||| ||| | ||||||||||||||||| ||    
T  14811613 aagaaacataacattagagagaagagaaatagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaatcc 14811514  T
Q  237 tattt 241  Q
    |||||    
T  14811513 tattt 14811509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 14314069 - 14314123
Alignment:
Q  53 tttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  14314069 tttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaaca 14314123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 13043510 - 13043564
Alignment:
Q  54 ttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaacaa 108  Q
    ||||||||||||||| |||||||| |||||||||||| | || ||||||||||||    
T  13043510 ttgtctaatgttgaccacttaatacttaacactaattgagattgaaaacaaacaa 13043564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 14314125 - 14314238
Alignment:
Q  135 caaagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaata-------gttatcgttatgtggtgac 227  Q
    |||||||||||  ||||||||  |||||||||| |||||||||||||    |||||||| |||||||| |||||       | ||| | |||||||||||    
T  14314125 caaagaaacataacattagagagaagagaaacaaagtagaattcaatcaccggtaatggttagaagagagaataactattggctattgctatgtggtgac 14314224  T
Q  228 gagaaaccctattt 241  Q
    ||||||||||||||    
T  14314225 gagaaaccctattt 14314238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 13043614 - 13043666
Alignment:
Q  126 gagaagaaccaaagaaacatggcattagagcaaagagaaacatagtagaattc 178  Q
    |||||||||  |||||||||  ||||||||  |||||||||||||||||||||    
T  13043614 gagaagaacagaagaaacataacattagagagaagagaaacatagtagaattc 13043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 29081213 - 29081149
Alignment:
Q  177 tcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccctattt 241  Q
    ||||| ||||||||||| ||||||||||||||  ||| | |  ||||||||||| ||||||||||    
T  29081213 tcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaaccctattt 29081149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 37791 - 37895
Alignment:
Q  137 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggatagaagagggaatagttatcgttatgtggtgacgagaaaccc 236  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  | |||||||| ||||||||  ||||| ||| | ||||||||||||||||||||    
T  37791 aagaaacataacattagagagaagagaaacagagtagaattcaatcagcggtaatggttagaagagaaaatagctattgctatgtggtgacgagaaaccc 37890  T
Q  237 tattt 241  Q
    |||||    
T  37891 tattt 37895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 37726 - 37786
Alignment:
Q  47 aacacctttgtctaatgttgactacttaatatttaacactaatttatatcgaaaacaaaca 107  Q
    |||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  37726 aacatctttgtctaatgttgactacttaacagttaacacaaatttatatcgaaaacaaaca 37786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1007 times since January 2019
Visitors: 6719