View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0888_high_3 (Length: 531)
Name: NF0888_high_3
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_high_3 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 27430679 - 27430153
Alignment:
| Q |
1 |
agaaggagtctgatcgtcctgtgggagatggtcatcaatggagaaagtatgggcnnnnnnngatcttgcacaccgattttccaaggnnnnnnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27430679 |
agaaggagtctgatcgtcctgtggaagatggtcatcaatggagaaagtatgggcaaaaaaagatcttgcacaccgattttccaaggtatatatat----- |
27430585 |
T |
|
| Q |
101 |
nttttacgagtttaattaagcactaacttcactatttgaacacattatcatgttaattattgattttcaaattaattaattttcactatgggaatatata |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430584 |
-ttttacgagtttaattaagcacaaacttcactatttgaacaaattatcatgttaattattgattttcaaattaattaattttcactatgggaatatata |
27430486 |
T |
|
| Q |
201 |
tttatttatat--gctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcc |
298 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430485 |
tttatttatatatgctttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatcc |
27430386 |
T |
|
| Q |
299 |
acctctttacaaaacaacctactatgcccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgttt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||| |||| ||| || ||||||||||| |
|
|
| T |
27430385 |
acctctttacaaaacaacctactatgcccatcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttc |
27430286 |
T |
|
| Q |
399 |
cttagttttgacaactctttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggagg |
498 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430285 |
cttagctttgacaactctttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggagg |
27430186 |
T |
|
| Q |
499 |
attgcaaggaagagattgttcatcctcctcctt |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27430185 |
attgcaaggaagagattgttcatcctcctcctt |
27430153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 214 - 455
Target Start/End: Complemental strand, 27447717 - 27447476
Alignment:
| Q |
214 |
tttgcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaac |
313 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||| || |
|
|
| T |
27447717 |
tttgcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggac |
27447618 |
T |
|
| Q |
314 |
aacctactatgcccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaac |
413 |
Q |
| |
|
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27447617 |
aacctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaac |
27447518 |
T |
|
| Q |
414 |
tctttcccaacaccagccaaacaagattgcccttttctctca |
455 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27447517 |
tctttcccaacaccagccaaacaagactgtccttttctctca |
27447476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 27447478 - 27447430
Alignment:
| Q |
483 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctcctt |
531 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctcctt |
27447430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 776 times since January 2019
Visitors: 6719