View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0888_high_4 (Length: 462)
Name: NF0888_high_4
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 44731458 - 44731757
Alignment:
| Q |
16 |
atcctacgaaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacatatagaattgagtacattacttattagattgatact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44731458 |
atcctacgaaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacatatagaattgagtacatcacttattagattgatact |
44731557 |
T |
|
| Q |
116 |
taccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731558 |
taccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagt |
44731657 |
T |
|
| Q |
216 |
tgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgcctaacttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731658 |
tgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgcctaacttg |
44731757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 30720029 - 30720315
Alignment:
| Q |
24 |
aaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacata---tagaattgagtacattacttattagattgatacttacca |
120 |
Q |
| |
|
||||| ||||||||||| |||| || |||| |||| ||||| ||| ||| |||||||| | |||||| | |||||| || ||||| || |||||||| |
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| T |
30720029 |
aaaaaggtaaattaaaa-ttaactagagtttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataatagatagacacttacca |
30720127 |
T |
|
| Q |
121 |
cattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagttgttt |
220 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || | ||||| |||||||||||||||||||| |||| | |
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| T |
30720128 |
cattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtacttgtct |
30720224 |
T |
|
| Q |
221 |
tcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgcctaa |
311 |
Q |
| |
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| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
30720225 |
ttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaatgcctaa |
30720315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 85 - 311
Target Start/End: Complemental strand, 30881267 - 30881044
Alignment:
| Q |
85 |
aattgagtacattacttattagattgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacggga |
184 |
Q |
| |
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|||||| | |||||| || ||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || | |
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| T |
30881267 |
aattgaatgcattacataatagatagacacttaccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa |
30881168 |
T |
|
| Q |
185 |
ttgcacttacattttcatacttaaaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggt |
284 |
Q |
| |
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||||| |||||||||||||||||||| |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
30881167 |
---cacttgcattttcatacttaaaagtacttgtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggt |
30881071 |
T |
|
| Q |
285 |
gaggtctgcaaattgattaatgcctaa |
311 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
30881070 |
gaggtctgcaaattgattaatgcctaa |
30881044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 30892413 - 30892127
Alignment:
| Q |
24 |
aaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacata---tagaattgagtacattacttattagattgatacttacca |
120 |
Q |
| |
|
||||| ||||||||||| |||| || |||| |||| ||||| ||| ||| |||||||| | |||||| | |||||| || ||||| || |||||||| |
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| T |
30892413 |
aaaaaggtaaattaaaa-ttaactagagtttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataatagatagacacttacca |
30892315 |
T |
|
| Q |
121 |
cattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagttgttt |
220 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || | ||||| |||||||||||||||||||| |||| | |
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|
| T |
30892314 |
cattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatacttaaaagtacttgtct |
30892218 |
T |
|
| Q |
221 |
tcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgcctaa |
311 |
Q |
| |
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| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
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| T |
30892217 |
ttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgatgtctgcaaattgattaatgcctaa |
30892127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 116 - 310
Target Start/End: Original strand, 16867932 - 16868126
Alignment:
| Q |
116 |
taccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||| || ||||||||| |||||||||||||||||||| | |
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|
| T |
16867932 |
taccacattgtccttggttcttcacaggtgtaactgctcctttcttcctccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
16868031 |
T |
|
| Q |
216 |
tgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgccta |
310 |
Q |
| |
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||| | | |||||| ||||||||||| |||||||| ||||||||||| | | ||||||| || ||||||||||| ||||||||||||| ||||| |
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| T |
16868032 |
tgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaacgccta |
16868126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 94 - 310
Target Start/End: Complemental strand, 8898879 - 8898663
Alignment:
| Q |
94 |
cattacttattagattgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcactta |
193 |
Q |
| |
|
||||| || |||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
8898879 |
cattagtttttagatagaaacgtaccacattggccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcactta |
8898780 |
T |
|
| Q |
194 |
cattttcatacttaaaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgc |
293 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||| |
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|
| T |
8898779 |
cattttcatacttaaaagtagttgtccttatgattgatgagcacatatgtcccttgaatttgttcctagatgctacaaactcctcattggtgaggtctgc |
8898680 |
T |
|
| Q |
294 |
aaattgattaatgccta |
310 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
8898679 |
aaattgattaatgccta |
8898663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 31726777 - 31726715
Alignment:
| Q |
113 |
acttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactg |
175 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||| || |||||||||||||| |
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|
| T |
31726777 |
acttaccacattggccttgatttttcacaggtgtcactgctccttcctgcctccaatccactg |
31726715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 54277110 - 54277046
Alignment:
| Q |
111 |
atacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactg |
175 |
Q |
| |
|
||||||||||||||||||||| ||||| || || || || || |||||||| |||||||| |||| |
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|
| T |
54277110 |
atacttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaactg |
54277046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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