View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0888_low_10 (Length: 320)
Name: NF0888_low_10
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 24687538 - 24687239
Alignment:
| Q |
1 |
tcatcaatatattccttttgatggttactactttctgtttcttcaactacattcatagtatcgttaagctcttccttcctacaaattcaagggctgttcc |
100 |
Q |
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| T |
24687538 |
tcatcaacatattccttttgatggttactactttctgtttcttcaactacattcatagtatcgttaagctcttccttcctacaaattcaagggctgttcc |
24687439 |
T |
|
| Q |
101 |
tattgctcaacctccaaatccggaaccacagcaggaagatcaggtgtaagattcgtgtgactaggtttggttgatattttgtgtttgtgattcttcttaa |
200 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| | | |||||||| |||||||||||||||||||||||||||||| |
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| T |
24687438 |
tattgctcaacctccaaatccagaatcacagcaggaagctcaggtgtaagattcattttgttaggtttgtttgatattttgtgtttgtgattcttcttaa |
24687339 |
T |
|
| Q |
201 |
tttgatgtgtctatgtaattgttcatccaaataaagcaagccctatgagattaaattgaaaaaataatacatgaatacagggttttttagttgatgatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
24687338 |
tttgatgtgtctatgtaattgttcatccaaataaagcaagccctatgagattaaattgaaaaaataatacatgaatacaggg-tttttagttgctgatgt |
24687240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 24679929 - 24679856
Alignment:
| Q |
10 |
tattccttttgatggttactactttctgtttcttcaactacattcatagtatcgttaagctcttccttcctaca |
83 |
Q |
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|||||||||| ||||||||| |||| ||||||||||||| ||| ||| ||||| ||| ||||| ||||||||| |
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| T |
24679929 |
tattccttttaatggttacttctttatgtttcttcaactgcatccatgatatcgctaaactctttcttcctaca |
24679856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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