View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0888_low_11 (Length: 295)
Name: NF0888_low_11
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33859922 - 33860156
Alignment:
| Q |
1 |
catattgttttagactgaaaggatgctacattttttcatactgcagtggaaatcacgaacgtgattggccaaactcaggatccttctatgacactccaga |
100 |
Q |
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| T |
33859922 |
catattgttttagactgaaaggatgctacattttttcatactgcagtggaaatcacgaacgtgattggccaaactcaggatccttctatgacactccaga |
33860021 |
T |
|
| Q |
101 |
ttcaggtggagaatgtggagttcctgcagaaaccatgtactattaccctgctgagaacaaagccaaattctggtaagttatattaatctaaatacaaacc |
200 |
Q |
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| T |
33860022 |
ttcaggtggagaatgtggagttcctgcagaaaccatgtactattaccctgctgagaacaaagccaaattctggtaagttatattaatctaaatacaaacc |
33860121 |
T |
|
| Q |
201 |
atgaaccaccaacatatggttggtccgagtgctaag |
236 |
Q |
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||||||||||||||||||||| | |||||||||||| |
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| T |
33860122 |
atgaaccaccaacatatggttag-ccgagtgctaag |
33860156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 33870273 - 33870476
Alignment:
| Q |
1 |
catattgttttagactgaaaggatgctacattttttcatactgcagtggaaatcacgaacgtgattggccaaactcaggatccttctatgacactccaga |
100 |
Q |
| |
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|||||| ||||| ||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33870273 |
catattcttttaaactgaaaggatatcacatttattcatactgcggtggaaatcacgaacgctcttggccaaactcaggatccttctatgacactccaga |
33870372 |
T |
|
| Q |
101 |
ttcaggtggagaatgtggagttcctgcagaaaccatgtactattaccctgctgagaacaaagccaaattctggtaagttatattaatctaaatacaaacc |
200 |
Q |
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| T |
33870373 |
ttctggtggagaatgtggagtacctgcagaaaccatgtactattaccctgctgagaacaaagccaaattctggtgagttatattaatctaaatgcaaact |
33870472 |
T |
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| Q |
201 |
atga |
204 |
Q |
| |
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|||| |
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| T |
33870473 |
atga |
33870476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 33875080 - 33875135
Alignment:
| Q |
138 |
tactattaccctgctgagaacaaagccaaattctggtaagttatattaatctaaat |
193 |
Q |
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|||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |
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| T |
33875080 |
tactattaccctgctgagaataaagccaaattctggtaatatttattaatctaaat |
33875135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 42784031 - 42784117
Alignment:
| Q |
36 |
tcatactgcagtggaaatcacgaacgtgattggccaaactcaggatccttctatgacactccagattcaggtggagaatgtggagtt |
122 |
Q |
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|||| ||||||||| ||||| |||||||||||||| |||||||||||||| |||||| | |||||||||| || || ||||||||| |
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| T |
42784031 |
tcatcctgcagtggtaatcatgaacgtgattggcccaactcaggatccttttatgacgttacagattcaggcggcgagtgtggagtt |
42784117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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