View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0888_low_13 (Length: 259)

Name: NF0888_low_13
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0888_low_13
NF0888_low_13
[»] chr1 (4 HSPs)
chr1 (133-236)||(46208076-46208180)
chr1 (141-226)||(46209425-46209512)
chr1 (138-235)||(50269375-50269473)
chr1 (199-235)||(42887759-42887795)
[»] chr6 (2 HSPs)
chr6 (138-236)||(15380982-15381079)
chr6 (156-225)||(24325389-24325459)
[»] chr2 (1 HSPs)
chr2 (157-237)||(20188377-20188458)
[»] chr5 (2 HSPs)
chr5 (188-237)||(21550097-21550146)
chr5 (167-235)||(37256018-37256086)
[»] chr8 (2 HSPs)
chr8 (158-217)||(45393936-45393995)
chr8 (199-235)||(29636900-29636936)
[»] chr7 (1 HSPs)
chr7 (187-233)||(28086543-28086589)
[»] scaffold0735 (1 HSPs)
scaffold0735 (199-235)||(712-748)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 46208180 - 46208076
Alignment:
Q  133 tacctacgtggcgtccatctcaaggccacgtgggctttgacctggtcaaaatagga-ggggccactaagttgcaaaagggggtgaaattggggggctgga 231  Q
    |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||| |||||||||| |||||||| ||||||| |||||    
T  46208180 tacccacgtggcgtccatctcatggccacgtgggctttgacctagtcaaaataggagggggtcactgagttgcaaaaaggggtgaagttgggggtctgga 46208081  T
Q  232 aagtt 236  Q
    |||||    
T  46208080 aagtt 46208076  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 46209425 - 46209512
Alignment:
Q  141 tggcgtccatctcaaggccacgtgggctttgacctggtcaaaatagga-ggggccactaagttgcaaaa-gggggtgaaattgggggg 226  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||| ||||||||    
T  46209425 tggcatccatctcatggccacgtgggctttgacccggtcaaaataggagggggccactgagttgcaaaaggggggtgaagttgggggg 46209512  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 50269473 - 50269375
Alignment:
Q  138 acgtggcgtccatctcaaggccacgtgggctttgacctggtcaaaataggaggggc-cactaagttgcaaaagggggtgaaattggggggctggaaagt 235  Q
    ||||||||||||||| | ||| || ||||||||||||  ||||||||  ||||||  |||| |||||||||||||||||||||| ||||||||||||||    
T  50269473 acgtggcgtccatctaatggctacctgggctttgacccagtcaaaatcagagggggtcactgagttgcaaaagggggtgaaattagggggctggaaagt 50269375  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 42887759 - 42887795
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagt 235  Q
    |||||||||||||||| |||||||||||||| |||||    
T  42887759 agttgcaaaagggggtaaaattggggggctgaaaagt 42887795  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 15380982 - 15381079
Alignment:
Q  138 acgtggcgtccatctcaaggccacgtgggctttgacctggtcaaaatagga-ggggccactaagttgcaaaagggggtgaaattggggggctggaaagtt 236  Q
    ||||||||||||||| | |||||| |||||||||||| ||||||||||||| ||||||||| ||  ||||||||||||||| ||||||||||| ||||||    
T  15380982 acgtggcgtccatctaagggccacatgggctttgaccgggtcaaaataggagggggccactgag--gcaaaagggggtgaagttggggggctgcaaagtt 15381079  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 24325459 - 24325389
Alignment:
Q  156 ggccacgtgggctttgacctggtcaaaataggagggg-ccactaagttgcaaaagggggtgaaattggggg 225  Q
    |||||| |||||||||||| ||||||||||||||||| ||| | ||||||||||| ||||||| |||||||    
T  24325459 ggccacatgggctttgacccggtcaaaataggaggggaccattgagttgcaaaagcgggtgaagttggggg 24325389  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 20188458 - 20188377
Alignment:
Q  157 gccacgtgggctttgacctggtcaaaataggagggg-ccactaagttgcaaaagggggtgaaattggggggctggaaagtta 237  Q
    ||||| ||||| ||||||| |||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  20188458 gccacatgggcattgacctagtcaaaatagaagggggccactgagttgcaaaagggggtgaagttggggggctggaaagtta 20188377  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 21550146 - 21550097
Alignment:
Q  188 aggggccactaagttgcaaaagggggtgaaattggggggctggaaagtta 237  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  21550146 aggggccactgagttgcaaaagggggtgaaattggggggctgaaaagtta 21550097  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 37256018 - 37256086
Alignment:
Q  167 ctttgacctggtcaaaataggagg-ggccactaagttgcaaaagggggtgaaattggggggctggaaagt 235  Q
    ||||||||||||||||||  |||| ||||  |||||||||||||||||| |||||  |||||||||||||    
T  37256018 ctttgacctggtcaaaatcagaggaggcctataagttgcaaaagggggtaaaatt-aggggctggaaagt 37256086  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 45393936 - 45393995
Alignment:
Q  158 ccacgtgggctttgacctggtcaaaataggaggggccactaagttgcaaaagggggtgaa 217  Q
    ||||||||||||||||| ||||||||||||||||| || | || ||||||||||||||||    
T  45393936 ccacgtgggctttgacccggtcaaaataggaggggtcaatgagatgcaaaagggggtgaa 45393995  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 29636900 - 29636936
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagt 235  Q
    |||||||||||||||||||||| ||||||||||||||    
T  29636900 agttgcaaaagggggtgaaattagggggctggaaagt 29636936  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 28086589 - 28086543
Alignment:
Q  187 gaggggccactaagttgcaaaagggggtgaaattggggggctggaaa 233  Q
    ||||||||  ||||||||||||||||||||| || ||||||||||||    
T  28086589 gaggggcctataagttgcaaaagggggtgaagttagggggctggaaa 28086543  T

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Target: scaffold0735 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 712 - 748
Alignment:
Q  199 agttgcaaaagggggtgaaattggggggctggaaagt 235  Q
    |||||||||||||||| |||||||||||||| |||||    
T  712 agttgcaaaagggggtaaaattggggggctgaaaagt 748  T

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