View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0888_low_19 (Length: 227)
Name: NF0888_low_19
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_19 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 3047221 - 3047029
Alignment:
| Q |
35 |
gccacacgacttcttttaggtcaaaaacctaannnnnnnngccacaacaaagataaattgaagaatcagtgattagaggagaaaggaaagtagagaggaa |
134 |
Q |
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| T |
3047221 |
gccacacgacttcttttaggtcaaaaacctaattttttttgccacaacaaagataaattgaagaatcagtgattagaggagaaaggaaagtagagaggaa |
3047122 |
T |
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| Q |
135 |
gcctttgtctagattcttaatcaatttggtccatataattttgatagtaatagatatttatttgtccatcaaaattaaagcacgtaagtcact |
227 |
Q |
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| T |
3047121 |
gcctttatctagattcttaatcaatctggtccatataattttgatagtaatagatatttatttgtccatcaaaattaaaacacgtaagtcact |
3047029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 3041254 - 3041117
Alignment:
| Q |
77 |
cacaacaaagataaattgaagaatcagtgattagaggagaaaggaaagtagagaggaagcctttgtctagattcttaatcaatttggtccatataatttt |
176 |
Q |
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| T |
3041254 |
cacaacaaagataaattgaagaatcagtgattagaggagaaaggaaattagagaggaagcc----------ttctgaatcaatttggtccatatgatttt |
3041165 |
T |
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| Q |
177 |
gatagt-aatagatatttatttgtccatcaaaattaaagcacgtaagtc |
224 |
Q |
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| T |
3041164 |
ggtagtaaatagatattt-tgtgtctatcaaaattaaagcacgtaagtc |
3041117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 3033623 - 3033483
Alignment:
| Q |
77 |
cacaacaaagataaattgaagaatcagtgattagaggagaaaggaaagtagagaggaagcctttgtctagattcttaatcaatttggtccatataatttt |
176 |
Q |
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| T |
3033623 |
cacaacaaagataaattgaagaatcagtgattagaggagaaaggaaattagagaggaagcc----------ttctgaatcaatttggtccatatgatttt |
3033534 |
T |
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| Q |
177 |
gatagt-aatagatatttatt--tgtccatcaaaattaaagcacgtaagtc |
224 |
Q |
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| T |
3033533 |
ggtagtaaatagatattttttcgtgtctatcaaaattaaagcacgtaagtc |
3033483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 3053867 - 3053780
Alignment:
| Q |
138 |
tttgtctagattcttaatcaatttggtccatataattttgatagt-aatagatatttatttgtccatcaaaattaaagcacgtaagtc |
224 |
Q |
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| T |
3053867 |
tttgtctagactctgaatcaatttggtccatataattttgatagtaaatagatatttttgtgtccatcaaatttaaagcacgtaagtc |
3053780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 25125653 - 25125715
Alignment:
| Q |
77 |
cacaacaaagataaattgaagaatcagtgattagaggagaaaggaaagtagagaggaagcctt |
139 |
Q |
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| T |
25125653 |
cacaacaaagataaattgaagaatcagtgattagaggagaaaggaaattagagaggaagcctt |
25125715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 3039549 - 3039464
Alignment:
| Q |
143 |
ctagattcttaatcaatttggtccatataattttgatagt-aatagatatttatt-tgtccatcaaaattaaagcacgtaagtcac |
226 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||| ||||||| |
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| T |
3039549 |
ctagattctgaatcaatttggtccatataattttgatagtaaatagatattttttgtgtccatcaaatttaaagcacgaaagtcac |
3039464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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