View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0888_low_2 (Length: 642)
Name: NF0888_low_2
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 30 - 635
Target Start/End: Original strand, 41976217 - 41976822
Alignment:
| Q |
30 |
aaaagtgcatgacaacacttagcatgcagaatcctcattgtgatgaagcagcattgtgttacgtcaaggtcgagcaaggttgccacaagcttacattgaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41976217 |
aaaagtgcatgacaacacttagcatgcagaatcctcaatgtgatgaagcagcattgtgttacgtcaaggtcgagcaaggttgccacaagcttagattgaa |
41976316 |
T |
|
| Q |
130 |
ttattttctctatgcagtatatgatg-atgtccatctgaaaactgtgaaatcaatcttctattttaattaaaacatgttatagaggagtaaaaggtgaag |
228 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41976317 |
ttattttctctatgcagtatatgatgtatatttatctgaaaactgtgaaatcaatcttctattttaattaaaacatgttatagaggagtaaaaggtgaag |
41976416 |
T |
|
| Q |
229 |
ggaatcctttggcgtgttgactctccagctcaagaatcatcagtgatttctgcctctgatatttgtttctcttggcagctagagctgcacaagaagccat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41976417 |
ggaatcctttggcgtgttgactctccagctcaagaatcatcagtgatttctgcctctgatatttgtttctcttggcagctagagctgcacaagaagccat |
41976516 |
T |
|
| Q |
329 |
aaaaacttgacaattagcacagccttcaaatatccaaggtccataaatacaacttttattccaaaactaaaatatctccaggcatatggtcaaatttaaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41976517 |
aaaaacttgacaattagcacagccttcaaatatccaaggtccataaatacaacttttattccaaaactaaaatatctccaggcatatggtcaaatttaaa |
41976616 |
T |
|
| Q |
429 |
cggctcaaaataaactttttacatgaaggacagtacaagaattatgtccagagctatgtgcaaaccactataacagtatgattactacttagttgacccc |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41976617 |
cggctcaaaataaactttttacatgaaggacagaacaagaattatgtccagagctatgtgcaaaccactataacagtatgattactacttagttga-ccc |
41976715 |
T |
|
| Q |
529 |
aacccgctttgagatttgacattgaagttgattgttagtatactaaaatgttatcaaaatagtgaatcactataaaggcatatggtgcatgcactaaagt |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41976716 |
aacccgctttgagatttgacattgaagttgattgttagtatactaaaatgttatcaaaatagtgaatcactataaaggcatatggtgcatgcactaaaat |
41976815 |
T |
|
| Q |
629 |
attatct |
635 |
Q |
| |
|
||||||| |
|
|
| T |
41976816 |
attatct |
41976822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 222 - 309
Target Start/End: Complemental strand, 22091918 - 22091831
Alignment:
| Q |
222 |
ggtgaagggaatcctttggcgtgttgactctccagctcaagaatcatcagtgatttctgcctctgatatttgtttctcttggcagcta |
309 |
Q |
| |
|
|||||||| | ||| || |||||||||||||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
22091918 |
ggtgaaggtagtcccttagcgtgttgactctccatctcaagaaccatcaaagatttttgcctctgatatcggtttctcttggcagcta |
22091831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 714 times since January 2019
Visitors: 6719