View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0888_low_20 (Length: 214)

Name: NF0888_low_20
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0888_low_20
NF0888_low_20
[»] chr6 (12 HSPs)
chr6 (1-113)||(22900265-22900377)
chr6 (1-113)||(22882330-22882442)
chr6 (1-113)||(22915258-22915362)
chr6 (1-88)||(22869532-22869619)
chr6 (1-88)||(22984423-22984510)
chr6 (1-88)||(23803908-23803995)
chr6 (35-88)||(18127408-18127461)
chr6 (35-88)||(22855718-22855771)
chr6 (1-86)||(22966163-22966250)
chr6 (1-86)||(23822143-23822230)
chr6 (4-87)||(22960627-22960710)
chr6 (4-87)||(23827682-23827765)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22900377 - 22900265
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22900377 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtcta 22900278  T
Q  101 gtttgctaagtat 113  Q
    |||||||||||||    
T  22900277 gtttgctaagtat 22900265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22882442 - 22882330
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtcta 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22882442 caagtgaatttttagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtcta 22882343  T
Q  101 gtttgctaagtat 113  Q
    |||||||||||||    
T  22882342 gtttgctaagtat 22882330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22915362 - 22915258
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttactttaatgtgtcta 100  Q
    ||||||||||||||||||||  ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22915362 caagtgaatttctagagcctctaagtcaaatgaaatatcacc--------tgccaatagagacatgccctatgactgatttgcttactttaatgtgtcta 22915271  T
Q  101 gtttgctaagtat 113  Q
    |||||||||||||    
T  22915270 gtttgctaagtat 22915258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 22869619 - 22869532
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttact 88  Q
    |||||||||||||  |||||  || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22869619 caagtgaatttctgaagcctctaattcaaatgaaatatcaccatatcacctaccaatagagacatgccctatgactgatttgcttact 22869532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22984423 - 22984510
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttact 88  Q
    |||||||||||||||||||   | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  22984423 caagtgaatttctagagccgccatgtcaaatgaaatatcaccatatcacttgccaatagagacatgccctatgattgatttgcttact 22984510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 23803995 - 23803908
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttact 88  Q
    |||||||||||||||||||   | ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  23803995 caagtgaatttctagagccgccatgtcaaatgaaatatcaccatatcacttgccaatagagacatgccctatgattgatttgcttact 23803908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 18127461 - 18127408
Alignment:
Q  35 atatcaccatatcacctgccaatagagacatgccctatgactgatttgcttact 88  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18127461 atatcactatatcacctgccaatagagacatgccctatgactgatttgcttact 18127408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 22855771 - 22855718
Alignment:
Q  35 atatcaccatatcacctgccaatagagacatgccctatgactgatttgcttact 88  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22855771 atatcactatatcacctgccaatagagacatgccctatgactgatttgcttact 22855718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 22966163 - 22966250
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatat--cacctgccaatagagacatgccctatgactgatttgctta 86  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||||  ||  |||||||||||||||||||||||| |||||||||||    
T  22966163 caagtgaatttctggagcctccaagtgaaatgaaatatcaccatatatcatgtgccaatagagacatgccctatgattgatttgctta 22966250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23822230 - 23822143
Alignment:
Q  1 caagtgaatttctagagccttaaagtcaaatgaaatatcaccatat--cacctgccaatagagacatgccctatgactgatttgctta 86  Q
    ||||||||||||| ||||||  |||| |||||||||||||||||||  ||  |||||||||||||||||||||||| |||||||||||    
T  23822230 caagtgaatttctggagcctccaagtgaaatgaaatatcaccatatatcatgtgccaatagagacatgccctatgattgatttgctta 23822143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 22960627 - 22960710
Alignment:
Q  4 gtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttac 87  Q
    |||||||| |||||| |  || ||||||||||||||||||||||||||||||||||||  |||||||| || ||||||||||||    
T  22960627 gtgaatttatagagcttctaactcaaatgaaatatcaccatatcacctgccaatagagtgatgccctacgattgatttgcttac 22960710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 23827765 - 23827682
Alignment:
Q  4 gtgaatttctagagccttaaagtcaaatgaaatatcaccatatcacctgccaatagagacatgccctatgactgatttgcttac 87  Q
    |||||||| |||||| |  || ||||||||||||||||||||||||||||||||||||  |||||||| || ||||||||||||    
T  23827765 gtgaatttatagagcttctaactcaaatgaaatatcaccatatcacctgccaatagagtgatgccctacgattgatttgcttac 23827682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 801 times since January 2019
Visitors: 6719