View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0888_low_21 (Length: 213)

Name: NF0888_low_21
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0888_low_21
NF0888_low_21
[»] chr6 (12 HSPs)
chr6 (1-132)||(22882418-22882549)
chr6 (1-132)||(22900353-22900484)
chr6 (6-124)||(22915343-22915461)
chr6 (7-92)||(22984356-22984441)
chr6 (7-92)||(23803977-23804062)
chr6 (13-75)||(22869607-22869669)
chr6 (7-66)||(22855772-22855831)
chr6 (8-75)||(22960574-22960641)
chr6 (6-73)||(22966115-22966182)
chr6 (6-73)||(23822211-23822278)
chr6 (8-75)||(23827751-23827818)
chr6 (7-64)||(18127462-18127519)
[»] chr1 (1 HSPs)
chr1 (21-65)||(45952587-45952631)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22882418 - 22882549
Alignment:
Q  1 ctttaaggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacatttcttcttgttattcattgcaaggagc 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22882418 ctttaaggctctaaaaattcacttgccaaaggagagctgccctacgagtgtttagcttaaacattttttacatttctccttgttattcattgcaaggagc 22882517  T
Q  101 ttctcagctttaaataaaggcatgatattgtt 132  Q
    |||||||||||||||||||||||||| |||||    
T  22882518 ttctcagctttaaataaaggcatgattttgtt 22882549  T

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Target: chr6; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22900353 - 22900484
Alignment:
Q  1 ctttaaggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacatttcttcttgttattcattgcaaggagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  22900353 ctttaaggctctagaaattcacttgccaaaggagagctgccctacgagtgtttagcttaaacattttttacatttttccttgttattcattgcaaggagc 22900452  T
Q  101 ttctcagctttaaataaaggcatgatattgtt 132  Q
    |||||||||||||||||||||||||| |||||    
T  22900453 ttctcagctttaaataaaggcatgattttgtt 22900484  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 22915343 - 22915461
Alignment:
Q  6 aggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacatttcttcttgttattcattgcaaggagcttctc 105  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  22915343 aggctctagaaattcacttgccaaaggagagctgccctgcgagtgtttagcttaaacattttttacatttctccttgttattcattgcaaggagtttctc 22915442  T
Q  106 agctttaaataaaggcatg 124  Q
    |||| ||||||||||||||    
T  22915443 agctataaataaaggcatg 22915461  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 22984441 - 22984356
Alignment:
Q  7 ggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacatttcttcttgttattcattg 92  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| || |||||    
T  22984441 ggctctagaaattcacttgccaaaggagagctgccctgtgagcgtttagcttaaacatttgttacatttttccttgtcatgcattg 22984356  T

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Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 23803977 - 23804062
Alignment:
Q  7 ggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacatttcttcttgttattcattg 92  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| | ||||| || |||||    
T  23803977 ggctctagaaattcacttgccaaaggagagctgccctgtgagcgtttagcttaaacatttgttacatttttccttgtcatgcattg 23804062  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 22869607 - 22869669
Alignment:
Q  13 agaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacattt 75  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22869607 agaaattcacttgccaaaggagagctgccctgtgagtgtttagcttaaacatttgttacattt 22869669  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 22855772 - 22855831
Alignment:
Q  7 ggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattt 66  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  22855772 ggctctagaaattcacttgccaaaggagagctgccctatgaatgtttagcttagacattt 22855831  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 22960641 - 22960574
Alignment:
Q  8 gctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacattt 75  Q
    |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22960641 gctctataaattcacctgccaaaggagagctgccctgtgagtgtttagcttaaacatttgttacattt 22960574  T

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Target: chr6; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 22966182 - 22966115
Alignment:
Q  6 aggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacat 73  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  22966182 aggctccagaaattcacttgccaaaggagagctgccctgtgagtgttttgcttaaacattctttacat 22966115  T

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Target: chr6; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 23822211 - 23822278
Alignment:
Q  6 aggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacat 73  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  23822211 aggctccagaaattcacttgccaaaggagagctgccctgtgagtgttttgcttaaacattctttacat 23822278  T

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Target: chr6; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 23827751 - 23827818
Alignment:
Q  8 gctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacattttttacattt 75  Q
    |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  23827751 gctctataaattcacctgccaaaggagagctgccctgtgagtgtttagcttaaacatttgttacattt 23827818  T

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Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 18127462 - 18127519
Alignment:
Q  7 ggctctagaaattcacttgccaaaggagagctgccctatgagtgtttagcttaaacat 64  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  18127462 ggctccagaaattcacttgccaaaggagagctgccctatgaatgtttagcttagacat 18127519  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 45952587 - 45952631
Alignment:
Q  21 acttgccaaaggagagctgccctatgagtgtttagcttaaacatt 65  Q
    |||||||||||||||||||| || ||||||||||||||| |||||    
T  45952587 acttgccaaaggagagctgctctttgagtgtttagcttagacatt 45952631  T

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