View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0888_low_4 (Length: 517)
Name: NF0888_low_4
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 22460856 - 22460536
Alignment:
| Q |
13 |
aatatcaaagaaagaaataaaacataaaataaaattggcatttagagttaaacctcaaaaatccgttacaaagtaccctctcaatatagtttgatcatag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22460856 |
aatatcaaagaaagaaataaaacataaaacaaaattggcatttagagttaaacctcaaaaatccgttacaaagtaccctctcaacatagtttgatcatag |
22460757 |
T |
|
| Q |
113 |
gtgtttacccttccattacaaaggatggtcatatttgaattcggtaaaatggcggctccaagatccttccggctcaaacaaacaaccttatttatactgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22460756 |
gtgtttacccttccattacaaaggattgtcatatttgaattcggtaaaatggcggctccaagatccttccggctcaaacaaacaaccttatttatactgc |
22460657 |
T |
|
| Q |
213 |
tcaaatatgaaaacctaattttgaatttgtatgaacaagagttggcccaataggcactaatcggcccattgcaacaaaagatcaagtggcctaaactcat |
312 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22460656 |
tcaaatatgaaaacctaatttcgaatttgtatgaacaagagttggcccaataggcgttaatcggcccattgcaataaaagatcaagtggcctaaactcat |
22460557 |
T |
|
| Q |
313 |
atttaacttcaatcctctaga |
333 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22460556 |
atttaacttcaatcctctaga |
22460536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 326 - 489
Target Start/End: Complemental strand, 22456888 - 22456725
Alignment:
| Q |
326 |
cctctagagatatgtaattttgaccatgaggacgttcgaacagggctttaggttcaacatgaaagtggtagctatgttccttagattttaaactcaaatt |
425 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22456888 |
cctctagagatatgtaattttgaccataaggacgttcgaactgggctttaggttcaacatgaaagttgtagctatgttccttagattttaaactcaaatt |
22456789 |
T |
|
| Q |
426 |
tgcattcctcaattgcataattgcaactaaagttatgatcggtgttgtgaacaagggtcattat |
489 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
22456788 |
tgcactcctcaattgcataattgcaactaaagttatgatcggtgttgtgaacagggatcattat |
22456725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 113 times since January 2019
Visitors: 6713