View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0888_low_5 (Length: 476)
Name: NF0888_low_5
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 22 - 476
Target Start/End: Complemental strand, 1885303 - 1884849
Alignment:
| Q |
22 |
catcatcacaggttctagctgattcaggcaaagcttcagcaagtacctgaaactttgtcaatgaaaggtttctatctcttgaaacctctgtaagataact |
121 |
Q |
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| T |
1885303 |
catcatcacaggttctagctgattcaggcaaagcttcagcaagtacctgaaactttgtcaatgaaaggtttctatctcttgaaacctctgtaagataact |
1885204 |
T |
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| Q |
122 |
gtcaacaagtcttgctactcttgctttagcattaaggttacatcccaatcccatatgtttctcagaaaatgactgtcttttcggactagaattttcagtc |
221 |
Q |
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| T |
1885203 |
gtcaacaagtcttgctactcttgctttagcattaaggttacatcccaatcccatatgtttctcagaaaatgactgtcttttcggactagaattttcagtc |
1885104 |
T |
|
| Q |
222 |
acttcttgtacaagaaaatgctcaagcagcctcataacaagatcaacatcatacatcattgtctctcctttattataacaaggaattaatagatcagcaa |
321 |
Q |
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| T |
1885103 |
acttcttgtacaagaaaatgctcaagcagcctcataacaagatcaacatcatacatcattgtctctcctttattataacaaggaattaatagatcagcaa |
1885004 |
T |
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| Q |
322 |
gtgtagcttgctcaaattgcattccaacccttttctctaattcagtaaccaatgcaggtgcaacctttaacataattgccattctcagaagcctaagaag |
421 |
Q |
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| T |
1885003 |
gtgtagcttgctcaaattgcattccaacccttttctctaattcagtaaccaatgcaggtgcaacctttaacataattgccattctcagaagcctaagaag |
1884904 |
T |
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| Q |
422 |
gaaagtacacgaaacagtatccttctgaggaggaataatgcttataagactctca |
476 |
Q |
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| T |
1884903 |
gaaagtacacgaaacagtatccttctgaggaggaataatgcttataagactctca |
1884849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 35 - 377
Target Start/End: Original strand, 37213870 - 37214206
Alignment:
| Q |
35 |
tctagctgattcaggcaaagcttcagcaagtacctgaaactttgtcaatgaaaggtttctatctcttgaaacctctgtaagataactgtcaacaagtctt |
134 |
Q |
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||||||||| ||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||| ||| |
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| T |
37213870 |
tctagctgactcaggtaaagcttctgcaagaacctgaaactttgtcgatgaaaggtttctatctctagatacctctgtaagataactgtccacaagcctt |
37213969 |
T |
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| Q |
135 |
gctactcttgctttagcattaaggttacatcccaatcccatatgtttctcagaaaatgactgtcttttcggactagaattttcagtcacttcttgtacaa |
234 |
Q |
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| T |
37213970 |
gccactcttgccttggcattcaggttacttccca---cattcttgtgatcagaaagggattgtctacttggactataaccttcagtttgttcttgaacaa |
37214066 |
T |
|
| Q |
235 |
gaaaatgctcaagcagcctcataacaagatcaacatcatacatcattgtctctcctttattataacaaggaattaatagatcagcaagtgtagcttgctc |
334 |
Q |
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| T |
37214067 |
gaaaatgctccaacaacctctgaacaagatccacatcata---catagtttcacttttctcatagcaaggaattagaagatcagaaagtgtagcttgctc |
37214163 |
T |
|
| Q |
335 |
aaattgcattccaacccttttctctaattcagtaaccaatgca |
377 |
Q |
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| T |
37214164 |
aaactgcattccaacccttttctctaaatcagtaatcaatgca |
37214206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 476
Target Start/End: Original strand, 37214307 - 37214399
Alignment:
| Q |
384 |
acctttaacataattgccattctcagaagcctaagaaggaaagtacacgaaacagtatccttctgaggaggaataatgcttataagactctca |
476 |
Q |
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||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| | || ||||| || ||||| ||||| || ||||||||| |
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| T |
37214307 |
acctttaacatgtttgccattctcagaagcctgagaaggaagctacacgagacactgtctttctgtggtggaattatgctgatgagactctca |
37214399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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