View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0888_low_8 (Length: 462)
Name: NF0888_low_8
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 44731450 - 44731757
Alignment:
| Q |
8 |
ccaacaatatcctacgaaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacatatagaattgagtacattacttattaga |
107 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44731450 |
ccaacaacatcctacgaaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacatatagaattgagtacatcacttattaga |
44731549 |
T |
|
| Q |
108 |
ttgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatactta |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731550 |
ttgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatactta |
44731649 |
T |
|
| Q |
208 |
aaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731650 |
aaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgc |
44731749 |
T |
|
| Q |
308 |
ctaacttg |
315 |
Q |
| |
|
|||||||| |
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|
| T |
44731750 |
ctaacttg |
44731757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 30720014 - 30720315
Alignment:
| Q |
8 |
ccaacaatatcctacgaaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacata---tagaattgagtacattacttatt |
104 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||| |||| || |||| |||| ||||| ||| ||| |||||||| | |||||| | |||||| || | |
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|
| T |
30720014 |
ccaacaacatcctac-aaaaaggtaaattaaaa-ttaactagagtttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataat |
30720111 |
T |
|
| Q |
105 |
agattgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatac |
204 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || | ||||| ||||||||||| |
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| T |
30720112 |
agatagacacttaccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatac |
30720208 |
T |
|
| Q |
205 |
ttaaaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaa |
304 |
Q |
| |
|
||||||||| |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
30720209 |
ttaaaagtacttgtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaa |
30720308 |
T |
|
| Q |
305 |
tgcctaa |
311 |
Q |
| |
|
||||||| |
|
|
| T |
30720309 |
tgcctaa |
30720315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 30881345 - 30881044
Alignment:
| Q |
8 |
ccaacaatatcctacgaaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacata---tagaattgagtacattacttatt |
104 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||| |||| || | || |||| ||||| ||| ||| |||||||| | |||||| | |||||| || | |
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|
| T |
30881345 |
ccaacaacatcctac-aaaaaggtaaattaaaa-ttaactagaatttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataat |
30881248 |
T |
|
| Q |
105 |
agattgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatac |
204 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || | ||||| ||||||||||| |
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|
| T |
30881247 |
agatagacacttaccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatac |
30881151 |
T |
|
| Q |
205 |
ttaaaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaa |
304 |
Q |
| |
|
||||||||| |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
30881150 |
ttaaaagtacttgtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgaggtctgcaaattgattaa |
30881051 |
T |
|
| Q |
305 |
tgcctaa |
311 |
Q |
| |
|
||||||| |
|
|
| T |
30881050 |
tgcctaa |
30881044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 30892428 - 30892127
Alignment:
| Q |
8 |
ccaacaatatcctacgaaaaacgtaaattaaaaattaattatagttaaatggcaattaaattttttatcacata---tagaattgagtacattacttatt |
104 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||| |||| || |||| |||| ||||| ||| ||| |||||||| | |||||| | |||||| || | |
|
|
| T |
30892428 |
ccaacaacatcctac-aaaaaggtaaattaaaa-ttaactagagtttaatgacaattcaatatttgatcacatagtttgtaattgaatgcattacataat |
30892331 |
T |
|
| Q |
105 |
agattgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatac |
204 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || || | ||||| ||||||||||| |
|
|
| T |
30892330 |
agatagacacttaccacattgaccttggttcttcactggtgttactgctcctttctttctccaatccactgttgatggaa---cacttgcattttcatac |
30892234 |
T |
|
| Q |
205 |
ttaaaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaa |
304 |
Q |
| |
|
||||||||| |||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||| |
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|
| T |
30892233 |
ttaaaagtacttgtctttgtgattgaggagcacatatgacctttgaatttgtttctagatgctatgaactcctcgttggtgatgtctgcaaattgattaa |
30892134 |
T |
|
| Q |
305 |
tgcctaa |
311 |
Q |
| |
|
||||||| |
|
|
| T |
30892133 |
tgcctaa |
30892127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 116 - 310
Target Start/End: Original strand, 16867932 - 16868126
Alignment:
| Q |
116 |
taccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcatacttaaaagtagt |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||| || ||||||||| |||||||||||||||||||| | |
|
|
| T |
16867932 |
taccacattgtccttggttcttcacaggtgtaactgctcctttcttcctccaatccaccgaggatggaattgcacttgcattttcatacttaaaagtact |
16868031 |
T |
|
| Q |
216 |
tgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgcaaattgattaatgccta |
310 |
Q |
| |
|
||| | | |||||| ||||||||||| |||||||| ||||||||||| | | ||||||| || ||||||||||| ||||||||||||| ||||| |
|
|
| T |
16868032 |
tgtccttgtgattgaagagcacatatgccccttgaacttgtttctagacgatgtgaactcgtcgttggtgaggtcggcaaattgattaacgccta |
16868126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 94 - 310
Target Start/End: Complemental strand, 8898879 - 8898663
Alignment:
| Q |
94 |
cattacttattagattgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcactta |
193 |
Q |
| |
|
||||| || |||||| || || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
8898879 |
cattagtttttagatagaaacgtaccacattggccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtagatgggattgcactta |
8898780 |
T |
|
| Q |
194 |
cattttcatacttaaaagtagttgttttcgcgattgaggagcacatatgacccttgaatttgtttctagatgctatgaactcttcattggtgaggtctgc |
293 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8898779 |
cattttcatacttaaaagtagttgtccttatgattgatgagcacatatgtcccttgaatttgttcctagatgctacaaactcctcattggtgaggtctgc |
8898680 |
T |
|
| Q |
294 |
aaattgattaatgccta |
310 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8898679 |
aaattgattaatgccta |
8898663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 31726777 - 31726715
Alignment:
| Q |
113 |
acttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactg |
175 |
Q |
| |
|
||||||||||||| ||||| || |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
31726777 |
acttaccacattggccttgatttttcacaggtgtcactgctccttcctgcctccaatccactg |
31726715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 54277110 - 54277046
Alignment:
| Q |
111 |
atacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactg |
175 |
Q |
| |
|
||||||||||||||||||||| ||||| || || || || || |||||||| |||||||| |||| |
|
|
| T |
54277110 |
atacttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaactg |
54277046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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