View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0888_low_9 (Length: 332)
Name: NF0888_low_9
Description: NF0888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0888_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 142 - 326
Target Start/End: Original strand, 49552300 - 49552484
Alignment:
| Q |
142 |
caaccacatcaaaatccaacttcaaagttcaccacatgttaattttaattatatttatttaaatctcttaaggtttgattttacaatggaatgaattcta |
241 |
Q |
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| T |
49552300 |
caaccacatcaaaatccaacttcaaagttcaccacatgttaattttaattatatttatttaaatctcttaaggtttgattttacaatggaatgaattcta |
49552399 |
T |
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| Q |
242 |
ttggaaattctaactaaaataattattgatcagaatttatacacttttgatcgaagtgtggattatcataacttatattcttcga |
326 |
Q |
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| T |
49552400 |
ttggaaattctaactaaaataattattgatcagaatttatacacttttgatcgaagtgtggattatcataacttattttcttcga |
49552484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 49551097 - 49551196
Alignment:
| Q |
30 |
ttgacaaacctaatcaaaattaaatcacatttcaccatccatttggatctcacataacttggattagtcttcgcatttgcaggcgggggatatttgattt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49551097 |
ttgacaaacctaatcaaaattaaatcacatttcaccatccatttgggtctcacataacttggattagtcttcgcatttgcaggcggaggatatttgattt |
49551196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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