View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0889_high_1 (Length: 523)
Name: NF0889_high_1
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0889_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 363
Target Start/End: Complemental strand, 11877951 - 11877619
Alignment:
| Q |
29 |
aaataatcattcgagtttttcttatcttgaaattttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaannnnnnn |
128 |
Q |
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| T |
11877951 |
aaataattattcgagtttttcttatcttgaaattttgttggaatgtgcttatattttacgaagatcaaatttgcatatcttgaaatatgcaaaatatata |
11877852 |
T |
|
| Q |
129 |
nnnnntaacaccaggaaaagtgtttttccaaagagtctttttacgaactatgcttatattttgctcattggagaaatataaaatcaagttcttagattaa |
228 |
Q |
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| T |
11877851 |
tat--taacaccaggaaaagtgtttttccaaagagtctttttacgaactgtgcttatattttgctcattggagaaatataaaatcaagttcttagattaa |
11877754 |
T |
|
| Q |
229 |
aaaattaacactagcgacatctaatgagtgtcttttattttgcactttattgcatttattgtaagataagattaacatactagagtaggatgacatgtaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11877753 |
aaaattaacactagcgacatctaatgagtgtcttttattttgcactttattgcatttattgtaagataagattaacatactagagtaggatgacatgtaa |
11877654 |
T |
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| Q |
329 |
aaattgtggaatctctaaaaagcaggaaaaatata |
363 |
Q |
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| T |
11877653 |
aaattgtggaatctctaaaaagcaggaaacatata |
11877619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 523
Target Start/End: Complemental strand, 11877551 - 11877466
Alignment:
| Q |
434 |
atgatttatggttaattttgatttaaaatcattcatttgaattgatttccttannnnnnnnnnaattaaataagtgatttttacatattt |
523 |
Q |
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| T |
11877551 |
atgatttatggttaattttgatttaaaatcattcattcgaattgattttctta----ttttttaattaaataagtgatttttacatattt |
11877466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 38783048 - 38783095
Alignment:
| Q |
430 |
agggatgatttatggttaattttgatttaaaatcattcatttgaattg |
477 |
Q |
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|||| ||||||| ||||||||||||| | ||||||||||||||||||| |
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| T |
38783048 |
aggggtgatttaaggttaattttgatctgaaatcattcatttgaattg |
38783095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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