View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0889_high_2 (Length: 464)

Name: NF0889_high_2
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0889_high_2
NF0889_high_2
[»] chr5 (3 HSPs)
chr5 (168-458)||(32026378-32026668)
chr5 (22-169)||(32026179-32026329)
chr5 (374-415)||(41484312-41484353)
[»] chr1 (3 HSPs)
chr1 (168-426)||(29451510-29451762)
chr1 (305-408)||(35306231-35306335)
chr1 (372-437)||(16300175-16300240)
[»] chr4 (3 HSPs)
chr4 (343-410)||(26829389-26829457)
chr4 (356-410)||(34494467-34494522)
chr4 (373-409)||(12567036-12567072)
[»] chr2 (4 HSPs)
chr2 (305-409)||(7444446-7444549)
chr2 (372-410)||(13016794-13016832)
chr2 (372-410)||(33406638-33406676)
chr2 (299-409)||(8856010-8856122)
[»] chr3 (2 HSPs)
chr3 (305-431)||(35231224-35231351)
chr3 (380-440)||(25909546-25909606)
[»] chr7 (1 HSPs)
chr7 (307-410)||(23416343-23416447)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 168 - 458
Target Start/End: Original strand, 32026378 - 32026668
Alignment:
Q  168 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  32026378 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgtttttttggtacaatagttatgtgttttctaatcattttaatagaatataa 32026477  T
Q  268 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatga 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32026478 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaataatga 32026577  T
Q  368 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcctctctgctcc 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  32026578 aacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccataatgttcctttatgctcc 32026668  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 32026179 - 32026329
Alignment:
Q  22 catcatcataaaatttatcaatcgtaaaaacataacagttctcgtagtgattaattacttgcttgcgttattttttatttaaagaaaatagcttgctgca 121  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32026179 catcattataaaatttatcaatcgtaaaagcataacagttctcgtagtgattaattacttgcttgcgttattttttatttaaagaaaatagcttgctgca 32026278  T
Q  122 ctttttgttggtca----tcattaactttttaatacctgttattaataatta 169  Q
    |||||| |||||||    |  |  ||||||||||||||||||||||||||||    
T  32026279 cttttt-ttggtcaagcttgctgcactttttaatacctgttattaataatta 32026329  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 41484312 - 41484353
Alignment:
Q  374 aatttgttccgctccatcataaaatatccaaacaatgaaatg 415  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  41484312 aatttgttccgttccatcgtaaaatatccaaacaatgaaatg 41484353  T

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Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 168 - 426
Target Start/End: Original strand, 29451510 - 29451762
Alignment:
Q  168 tatagtttcagaaaatgtaacttcaaccacttgctattataattatatgnnnnnnnggtacaatagttatgtgttttctaatcattttaatagaatataa 267  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||         ||||||| |||| |||||||||||||||| || | |||||||    
T  29451510 tatagctttagaaaatgtaacttcaaccacttgttattataattatatgtttttct--tacaataattatatgttttctaatcatttaaaaaaaatataa 29451607  T
Q  268 atgctttacttttatatattagtattttaaattaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-g 366  Q
    |||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| || ||||     |||| |||||||| ||| |    
T  29451608 atgctttgattttatataatagtattttaaattaaagaaaggtaaaattggaataaaaaatttatgactcagttca-----tcaacaatccaaataatgg 29451702  T
Q  367 aaacataaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctatt 426  Q
    ||  ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||    
T  29451703 aatgataaatttgttccgctgaatcataaaatatccaaacaatggaatgagctatttatt 29451762  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 408
Target Start/End: Complemental strand, 35306335 - 35306231
Alignment:
Q  305 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 403  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||||||| ||| |||    
T  35306335 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcataatataccca 35306236  T
Q  404 aacaa 408  Q
    |||||    
T  35306235 aacaa 35306231  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 16300240 - 16300175
Alignment:
Q  372 taaatttgttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattc 437  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||   || |||| ||||||||||||    
T  16300240 taaatttattccgctccatcatataatatccaaacaatggaattgactgtctactccatttcattc 16300175  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 410
Target Start/End: Original strand, 26829389 - 26829457
Alignment:
Q  343 attccgtcaataatccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 410  Q
    ||||||| |||  ||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||    
T  26829389 attccgttaattttccaaacaatggaaaggtaaatttgttccgctccatcataaaatacccaaacaatg 26829457  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 34494522 - 34494467
Alignment:
Q  356 tccaaacaatg-aaacataaatttgttccgctccatcataaaatatccaaacaatg 410  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||  |||||||||    
T  34494522 tccaaacaatggaaaggtaaatttgttccgctccatcataaaatactcaaacaatg 34494467  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 12567036 - 12567072
Alignment:
Q  373 aaatttgttccgctccatcataaaatatccaaacaat 409  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12567036 aaatctgttccgctccatcataaaatacccaaacaat 12567072  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 7444549 - 7444446
Alignment:
Q  305 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacataaatttgttccgctccatcataaaatatccaa 404  Q
    ||||||||| |||||||||||||||||| || | || | || |||||||  |||||||||||||  | ||||  |||||| ||||||||||| |||||||    
T  7444549 aagggtaaaattggaataaaaaatttataactcgttccgtttcgtcaatt-tccaaacaatgaataaaaaataagttccgttccatcataaagtatccaa 7444451  T
Q  405 acaat 409  Q
    |||||    
T  7444450 acaat 7444446  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 13016794 - 13016832
Alignment:
Q  372 taaatttgttccgctccatcataaaatatccaaacaatg 410  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  13016794 taaatttgttccgctccatcataaaatactcaaacaatg 13016832  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 33406676 - 33406638
Alignment:
Q  372 taaatttgttccgctccatcataaaatatccaaacaatg 410  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  33406676 taaatatgttctgctccatcataaaatatccaaacaatg 33406638  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 8856010 - 8856122
Alignment:
Q  299 ttaaagaagggtaaatttggaataaaaaatttatgacccatttcattccgt-caataatccaaacaatgaaacata-aatttgttccgctccatcataaa 396  Q
    ||||| |||||||||  || ||||||||| |||| || |||| |||||||| || |  ||||||||||| ||||   ||||||||||||||| ||||| |    
T  8856010 ttaaacaagggtaaaaatgaaataaaaaagttataacacattccattccgttcatttttccaaacaatggaacaagtaatttgttccgctccgtcatata 8856109  T
Q  397 atatccaaacaat 409  Q
    ||| |||||||||    
T  8856110 atacccaaacaat 8856122  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 431
Target Start/End: Complemental strand, 35231351 - 35231224
Alignment:
Q  305 aagggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaat-gaaacataaatttgttccgctccatcataaaatatcca 403  Q
    ||||||||| ||||||||||||| |||| || |||| ||||||||||||  |||||||||| |||  | || | | |||||||||||| ||| ||| |||    
T  35231351 aagggtaaaattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcgtaatataccca 35231252  T
Q  404 aacaatgaaatgagctatctattccatt 431  Q
    ||||| | | ||| || |||||||||||    
T  35231251 aacaaaggagtgaactctctattccatt 35231224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 25909546 - 25909606
Alignment:
Q  380 ttccgctccatcataaaatatccaaacaatgaaatgagctatctattccatttcattccat 440  Q
    ||||| |||||||||||||||||||||| || |||||  |||||||||||||  |||||||    
T  25909546 ttccgttccatcataaaatatccaaacagtggaatgaaatatctattccattcgattccat 25909606  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 23416447 - 23416343
Alignment:
Q  307 gggtaaatttggaataaaaaatttatgacccatttcattccgtcaataatccaaacaatgaaacata-aatttgttccgctccatcataaaatatccaaa 405  Q
    |||||||  ||||||||||||||||| || |||| ||||||||  ||  ||||||||||| || |   |||||||||||||||||  || |||| |||||    
T  23416447 gggtaaaaatggaataaaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttccgctccattgtataatacccaaa 23416348  T
Q  406 caatg 410  Q
    |||||    
T  23416347 caatg 23416343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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