View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0889_high_4 (Length: 430)
Name: NF0889_high_4
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0889_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 28518965 - 28519307
Alignment:
| Q |
1 |
cacagggtggaagatgatgtcaaaggcaatcaacatcctgagcatgaacctcttccatataaagacaacttacagcaagtacaagatgtggtgagatctc |
100 |
Q |
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| T |
28518965 |
cacagggtggaagatgatgtcaaaggcaatcaacatcctgaacatgaacctcttccatataaagacaacttacagcaagtacaagatgtggtgagatctc |
28519064 |
T |
|
| Q |
101 |
ggtctgataatggtcaaaaagagcacgaaaacaatactcttagaactgaaacgaaagaacattctgaatcgaaagataaacataacagcagaaacccaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28519065 |
ggtctgataatggtcaaaaagagcacgaaaacaatactcttagaactgaaactaaagaacattctgaatcgaaagataaacataacagcagaaacccaga |
28519164 |
T |
|
| Q |
201 |
tcataaggatgttagtatgcttagccgacctcctcaggaagctattnnnnnnntcaatacagacaaggtaaaggctgcattagaaaaacgaaggaaagca |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28519165 |
tcataaggatgttagtatgcttagccggcctcctcaggaagctattaaaaaaatcaatacagacaaggtaaaggctgcattagaaaaacgaaggaaagca |
28519264 |
T |
|
| Q |
301 |
gctggtcatctaaccnnnnnnncagatttcatggatgatgatg |
343 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||| |
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| T |
28519265 |
gctggtcatctaaccaaaaaaacagatttcatggatgacgatg |
28519307 |
T |
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