View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0889_high_5 (Length: 401)

Name: NF0889_high_5
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0889_high_5
NF0889_high_5
[»] chr6 (11 HSPs)
chr6 (79-396)||(19999714-20000030)
chr6 (1-387)||(9280169-9280557)
chr6 (1-387)||(9294967-9295360)
chr6 (79-387)||(9288157-9288451)
chr6 (1-173)||(9289580-9289758)
chr6 (175-348)||(22544008-22544180)
chr6 (1-173)||(20006867-20007046)
chr6 (8-52)||(19999632-19999676)
chr6 (315-384)||(16447306-16447375)
chr6 (283-347)||(24359265-24359330)
chr6 (31-61)||(9288110-9288140)
[»] scaffold0019 (3 HSPs)
scaffold0019 (79-387)||(176704-177012)
scaffold0019 (1-68)||(146525-146592)
scaffold0019 (13-68)||(176626-176681)
[»] chr7 (5 HSPs)
chr7 (283-348)||(15712240-15712305)
chr7 (319-384)||(9259977-9260042)
chr7 (319-384)||(9310252-9310317)
chr7 (315-382)||(16201754-16201821)
chr7 (315-369)||(20931646-20931700)
[»] chr2 (3 HSPs)
chr2 (283-348)||(25044035-25044100)
chr2 (319-384)||(9961977-9962042)
chr2 (315-384)||(30374675-30374744)
[»] scaffold0427 (1 HSPs)
scaffold0427 (283-348)||(11347-11411)
[»] chr1 (3 HSPs)
chr1 (80-173)||(40167572-40167665)
chr1 (315-387)||(16768560-16768632)
chr1 (8-68)||(40167695-40167754)
[»] chr5 (2 HSPs)
chr5 (321-384)||(23276228-23276291)
chr5 (303-346)||(19073577-19073620)
[»] chr8 (4 HSPs)
chr8 (166-327)||(15660806-15660966)
chr8 (316-384)||(1271879-1271948)
chr8 (175-348)||(15549410-15549584)
chr8 (303-348)||(24093596-24093641)
[»] chr3 (3 HSPs)
chr3 (317-384)||(30215506-30215573)
chr3 (317-380)||(30215868-30215931)
chr3 (315-384)||(2276317-2276386)
[»] scaffold0039 (1 HSPs)
scaffold0039 (316-369)||(22599-22652)
[»] chr4 (2 HSPs)
chr4 (321-381)||(19536406-19536466)
chr4 (315-380)||(15849837-15849902)
[»] scaffold0163 (1 HSPs)
scaffold0163 (322-389)||(6722-6789)
[»] scaffold0128 (1 HSPs)
scaffold0128 (310-348)||(14119-14157)
[»] scaffold0501 (1 HSPs)
scaffold0501 (315-387)||(10069-10140)
[»] scaffold0300 (1 HSPs)
scaffold0300 (315-383)||(12839-12907)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 79 - 396
Target Start/End: Original strand, 19999714 - 20000030
Alignment:
Q  79 gaatcgagtgttgaaaataatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctctattct 178  Q
    ||||||||||||||||||||||||||||||   || |||||||||| ||| | ||||||||||||| | |||||||| ||||||||||||||||||||||    
T  19999714 gaatcgagtgttgaaaataatagttagtaatggtaccttgctagaagaagttggagttttggagcctgccattgatttagcaaacaaatctctctattct 19999813  T
Q  179 ctcactagccaccttttgtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaatgggttcagtttcc 278  Q
    || || | |||||||||||||||| |||||||||| |||| ||||||||||| |  | |||||||| |||||||||||||||| |||||| |  ||||||    
T  19999814 ctgaccaaccaccttttgtgaagtttgtgaaatgagtgctcaaccctaatttcttgctagagttatacatatatagtctcacttaatgggctaggtttcc 19999913  T
Q  279 ctcatcttaatgggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctat 378  Q
    |||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |||||||| ||||||||    
T  19999914 ctcatcttaatgggcctaat-aacttctcatctcattaaaatgttgctacaaaattacttcattaaaaccctcaagattactaatacaccaccattctat 20000012  T
Q  379 taattatcctatgctact 396  Q
    ||||||||| | ||||||    
T  20000013 taattatcccaagctact 20000030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 9280169 - 9280557
Alignment:
Q  1 tcatcctagaagagttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaaaaccctnnnnnnnncc-----gaatcgagtgttgaaaa 95  Q
    |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||               |||| ||||||||||||    
T  9280169 tcatcccataagagttaacaagaatgaatcaagaaaaatagttgaaaattaagggatgacaaaaccctaaaaaaaaaaaaaaggaatggagtgttgaaaa 9280268  T
Q  96 taatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctctattctctcactagccacctttt 195  Q
    ||||||||||||| | || |||||||||| ||| |  || | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9280269 taatagttagtaatagtaccttgctagaagaagttgtagctctggagctcgacattgattcagcaaacaaatcactctattctctcactagccacctttt 9280368  T
Q  196 gtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaatgggttcagtttccctcatcttaatgggcct 295  Q
     | |||| ||||||||||||  | ||||||||||| | || || | ||| | |||||||||| |||||||| | |  |||||||||||||| ||||||||    
T  9280369 ataaagtttgtgaaatgaat--tcaaccctaatttcttacaagtgctatccgtatatagtctgactaaatgagcttggtttccctcatcttgatgggcct 9280466  T
Q  296 agtaaatttctcatctcattaaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaattatcc 387  Q
    ||||| ||||| || |||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||| |  ||||||||||||||||    
T  9280467 agtaactttcttatatcattaaattgttgctacaaaattacttcatt-aaaccctcaatattactcatacacaactattctattaattatcc 9280557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 9294967 - 9295360
Alignment:
Q  1 tcatcctagaagagttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaaaaccctnnnnnnnncc----------gaatcgagtgtt 90  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                    ||||||||||||    
T  9294967 tcatcccagaagagttaacaagaatggatcaaggaaaatagttgaaaattaagggatgacaaaaccctaaaaaaaaaaaaaaaaaaaggaatcgagtgtt 9295066  T
Q  91 gaaaataatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctctattctctcactagccac 190  Q
    |||||||||||||||||| | || |||||||||| ||| |  || | ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  9295067 gaaaataatagttagtaatagtaccttgctagaagaagttgtagctctggagcccgacattgattcagcaaacaaatcactctactctctcactagccac 9295166  T
Q  191 cttttgtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaatgggttcagtttccctcatcttaatg 290  Q
    ||||| | |||| ||||||||||||  | ||||||||||| | || || | ||| ||| |||||||| |||||||||| |  |||||||| ||||| |||    
T  9295167 cttttataaagtttgtgaaatgaat--tcaaccctaatttcttacaagtgctatccatttatagtctgactaaatgggcttggtttcccttatcttgatg 9295264  T
Q  291 ggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaattatcc 387  Q
    |||||||||| |||||||| |||||||| |||| |||||||||||||| ||| |||||||||||||||||||||||  |  ||||||||||||||||    
T  9295265 ggcctagtaactttctcatatcattaaattgttgctacaaaattacttcatt-aaaccctcaatattactcatacataactattctattaattatcc 9295360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 79 - 387
Target Start/End: Original strand, 9288157 - 9288451
Alignment:
Q  79 gaatcgagtgttgaaaataatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctctattct 178  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||| |    
T  9288157 gaatcgagtgttgaaaataatagttagtaacaataccttgctagaagaagttggagttttggagcccgacattgattcaacaaacaaatctctctatttt 9288256  T
Q  179 ctcactagccaccttttgtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaatgggttcagtttcc 278  Q
    ||||| ||||||||||         ||||||||||||| | |||||||| |||| || || ||||| |||||||||||| ||    |||| |  |||||     
T  9288257 ctcaccagccaccttt---------tgtgaaatgaatgttgaaccctaa-ttttcactagtgttatgcatatatagtctgac----tgggctaggtttct 9288342  T
Q  279 ctcatcttaatgggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctat 378  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| | ||||| ||    
T  9288343 ctcatcttaatgggcctagtaactttctcatctcattaaaatgttactacaaaattacttcattaaaaccctctatattactcttacacgaccattcaat 9288442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 9289580 - 9289758
Alignment:
Q  1 tcatcctagaagagttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaaaaccct------nnnnnnnnccgaatcgagtgttgaaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||                |||  |||||||||||    
T  9289580 tcatcctagaagagttaacaagaatggatcaagaaaaatagttgaaaattatgggatgacaaaagcctaaacaaaaaaaaagaggaagggagtgttgaaa 9289679  T
Q  95 ataatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctct 173  Q
    |||||||||||||||| || ||||||| || ||| | |||||||||||||| ||||||||| | ||||||||| |||||    
T  9289680 ataatagttagtaacagtaccttgctaaaagaagttggagttttggagcccaacattgattgaacaaacaaatttctct 9289758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 175 - 348
Target Start/End: Original strand, 22544008 - 22544180
Alignment:
Q  175 ttctctcactagccaccttttgtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaatgggttcagt 274  Q
    ||||||| |||||||||||||||||| | ||| ||||||||||| || |||||||| | || |||||||| | |||||||||||||||  |  | | ||     
T  22544008 ttctctctctagccaccttttgtgaaatttgtaaaatgaatgctcaatcctaatttcttactagagttatccttatatagtctcacta--ttagcttaga 22544105  T
Q  275 ttccctcatct--taatgggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaacc 348  Q
    || |||| |||  ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  22544106 tttcctcctctcttaatgggcctagtaactt-ctcatctcattaaaatgttactacaaaattacttcattaaaacc 22544180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 20007046 - 20006867
Alignment:
Q  1 tcatcctagaagagttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaaaaccctnnnnnnnncc---------gaatcgagtgttg 91  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||                   |||| ||||||||    
T  20007046 tcatgctagaacagttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaa--ccctaaaaaaaaaaaaaaaagaggaattgagtgttg 20006949  T
Q  92 aaaataatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctct 173  Q
    ||||||||||| |||||||||| |||||||||| ||| | ||||||||||||| |||||||||||| ||||||||| |||||    
T  20006948 aaaataatagtgagtaacaataccttgctagaagaagttggagttttggagcctgacattgattcaacaaacaaatttctct 20006867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 19999632 - 19999676
Alignment:
Q  8 agaagagttaacaagaatggatcaagaaaaatagttgaaaattaa 52  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19999632 agaagagttaacaagaatggatcaagaaaaatagttgaaaattaa 19999676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 16447306 - 16447375
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    |||| ||||| |||| |||||||| |||||||  |||| ||||||||||||||||| |||||||||||||    
T  16447306 taaactgttaatacacaattacttcattaaaattctcactattactcatacaccattattctattaatta 16447375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 24359265 - 24359330
Alignment:
Q  283 tcttaatgggcctagtaaattt-ctcatctcattaaaatgttactacaaaattactttattaaaac 347  Q
    |||||||||||||||||| ||| |||  ||||||||||| ||||||||||||||||| ||||||||    
T  24359265 tcttaatgggcctagtaacttttctccactcattaaaatattactacaaaattacttcattaaaac 24359330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 9288110 - 9288140
Alignment:
Q  31 aagaaaaatagttgaaaattaagggatgaca 61  Q
    |||||||||||||||||||||||||||||||    
T  9288110 aagaaaaatagttgaaaattaagggatgaca 9288140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 79 - 387
Target Start/End: Original strand, 176704 - 177012
Alignment:
Q  79 gaatcgagtgttgaaaataatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctctattct 178  Q
    |||||||||||||||||||||||||||||| | || |||||||||  ||| | ||||||||||||| | |||||||| |||||| ||||||||||| |||    
T  176704 gaatcgagtgttgaaaataatagttagtaatagtaccttgctagacgaagttggagttttggagcctgccattgatttagcaaaaaaatctctctaatct 176803  T
Q  179 ctcactagccaccttttgtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaatgggttcagtttcc 278  Q
    ||||| | |||||||||||||||| |||||||||| ||   ||||||||||| | ||||||||||| ||||||||||||||||||||||| |  ||||||    
T  176804 ctcaccaaccaccttttgtgaagtttgtgaaatgagtgtgcaaccctaatttcttaccagagttatccatatatagtctcactaaatgggctaggtttcc 176903  T
Q  279 ctcatcttaatgggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctat 378  Q
    ||||||||||||||||||  || |||||||||||||||||||||| ||||||||||| || || |||||||| ||||||||||||||||||  |||||||    
T  176904 ctcatcttaatgggcctaagaactttctcatctcattaaaatgttgctacaaaattatttcatcaaaacccttaatattactcatacaccactattctat 177003  T
Q  379 taattatcc 387  Q
    |||||||||    
T  177004 taattatcc 177012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 146525 - 146592
Alignment:
Q  1 tcatcctagaagagttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaaaaccct 68  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||    
T  146525 tcatcccagaagagttaacaagaatggatcaagaaaaagagttgaaaattaaagtatgataaaaccct 146592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 176626 - 176681
Alignment:
Q  13 agttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaaaaccct 68  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||    
T  176626 agttaacaagaatggatcaagaaaaagagttgaaaattaaagtatgagaaaaccct 176681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 15712305 - 15712240
Alignment:
Q  283 tcttaatgggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaacc 348  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  15712305 tcttaatgggcctagtaactttttcatctcattaaaatgttactacacaattactttattaaaacc 15712240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 9259977 - 9260042
Alignment:
Q  319 atgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  9259977 atgttactatacaattacttcattaaaaccctcaatattactcatacatcattattctattaatta 9260042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 9310317 - 9310252
Alignment:
Q  319 atgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  9310317 atgttactatacaattacttcattaaaaccctcaatattactcatacatcattattctattaatta 9310252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 382
Target Start/End: Complemental strand, 16201821 - 16201754
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaat 382  Q
    ||||||||||||||| || ||||| | |||||||| || ||||||||||||||||  |||||||||||    
T  16201821 taaaatgttactacacaactacttcagtaaaacccccattattactcatacaccactattctattaat 16201754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 20931700 - 20931646
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacacca 369  Q
    |||| |||||||||| |||||||| |||||||||| || || |||||||||||||    
T  20931700 taaactgttactacataattacttcattaaaacccccattagtactcatacacca 20931646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 25044035 - 25044100
Alignment:
Q  283 tcttaatgggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaacc 348  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||    
T  25044035 tcttaatgggcctagtaactttctcatctcattaaaatgttactacacaattacttcattaaaacc 25044100  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 9961977 - 9962042
Alignment:
Q  319 atgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    ||||||||||| |||||||| ||||||||| ||| |||||||||||||| |  || ||||||||||    
T  9961977 atgttactacacaattacttcattaaaaccttcactattactcatacacaactatcctattaatta 9962042  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 30374675 - 30374744
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    |||||| |||||||| |||| ||| ||||||||||||| |||||| |||||||||  |||| ||||||||    
T  30374675 taaaatattactacacaattgcttcattaaaaccctcactattacccatacaccactattccattaatta 30374744  T

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Target: scaffold0427 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 11347 - 11411
Alignment:
Q  283 tcttaatgggcctagtaaatttctcatctcattaaaatgttactacaaaattactttattaaaacc 348  Q
    ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  11347 tcttaatgggcttagtaactt-ctcatctcattaaaatgttactacaaaattactttattaaaacc 11411  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 40167665 - 40167572
Alignment:
Q  80 aatcgagtgttgaaaataatagttagtaacaatatcttgctagaaaaagcttgagttttggagcccgacattgattcagcaaacaaatctctct 173  Q
    |||||||| ||||||| |||||  ||||||  || |||||||||| ||| | ||||||||||| |||||||||||||||||||||||| |||||    
T  40167665 aatcgagttttgaaaagaataggcagtaacggtaccttgctagaagaagatggagttttggaggccgacattgattcagcaaacaaatttctct 40167572  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 16768560 - 16768632
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaattatcc 387  Q
    ||||||||||||||| |||||| | |||||||||| || ||||||||||||||||  ||||||||||||||||    
T  16768560 taaaatgttactacacaattacctcattaaaacccccactattactcatacaccactattctattaattatcc 16768632  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 40167754 - 40167695
Alignment:
Q  8 agaagagttaacaagaatggatcaagaaaaatagttgaaaattaagggatgacaaaaccct 68  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||    
T  40167754 agaagagttaacaagaatagatcaagaaaaatagttgaaaattaa-ggaagacaaaaccct 40167695  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 384
Target Start/End: Complemental strand, 23276291 - 23276228
Alignment:
Q  321 gttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    ||||||||| |||||||| ||||||||||||||||||||||| ||||||  |||||||||||||    
T  23276291 gttactacacaattacttcattaaaaccctcaatattactcacacaccactattctattaatta 23276228  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 346
Target Start/End: Complemental strand, 19073620 - 19073577
Alignment:
Q  303 ttctcatctcattaaaatgttactacaaaattactttattaaaa 346  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  19073620 ttctcatctcattaaaatgttactacaaaattacttcattaaaa 19073577  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 327
Target Start/End: Complemental strand, 15660966 - 15660806
Alignment:
Q  166 atctctctattctctcactagccaccttttgtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaat 265  Q
    ||||||||||||||||  ||||||||||| || ||   | ||||||||||||| ||| ||| ||  | || | |||||| | |||||||||||||||  |    
T  15660966 atctctctattctctctatagccacctttggtaaaacttatgaaatgaatgctcaactctagttgcttactaaagttatccttatatagtctcactat-t 15660868  T
Q  266 gggttcagtttccctca-tcttaatgggcctagtaaatttctcatctcattaaaatgttacta 327  Q
     ||||  |||||||||| ||||||||| |||||||| || |||||||||||||||||||||||    
T  15660867 aggttaggtttccctcaatcttaatggacctagtaagtt-ctcatctcattaaaatgttacta 15660806  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 1271948 - 1271879
Alignment:
Q  316 aaaatgttactacaaaattactttattaaaaccctcaatattactcataca-ccatcattctattaatta 384  Q
    |||||||||||||| |||||||| ||||||| ||||| ||||||||||||| |||  |||||||||||||    
T  1271948 aaaatgttactacacaattacttcattaaaatcctcagtattactcatacacccactattctattaatta 1271879  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 348
Target Start/End: Complemental strand, 15549584 - 15549410
Alignment:
Q  175 ttctctcactagccaccttttgtgaagtatgtgaaatgaatgctaaaccctaatttttgaccagagttattcatatatagtctcactaaatgggttcagt 274  Q
    ||||||| || ||||||||| || || | | ||||||||||||  |||| |||||    || || ||||| | |||||||||||||||| ||||||  ||    
T  15549584 ttctctctctggccacctttggtaaaatttatgaaatgaatgcacaaccttaattcaccactagtgttatccttatatagtctcactaa-tgggttaggt 15549486  T
Q  275 ttccctca-tcttaatgggcctagtaaattt-ctcatctcattaaaatgttactacaaaattactttattaaaacc 348  Q
    || | ||  |||||||| ||||||||| ||| |||  ||||||||| ||||||||||||||||||| |||||||||    
T  15549485 tttcatctctcttaatgagcctagtaacttttctccactcattaaattgttactacaaaattacttcattaaaacc 15549410  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 24093596 - 24093641
Alignment:
Q  303 ttctcatctcattaaaatgttactacaaaattactttattaaaacc 348  Q
    |||||||||||||||||| ||| ||| ||||||||| |||||||||    
T  24093596 ttctcatctcattaaaatattattactaaattacttcattaaaacc 24093641  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 30215506 - 30215573
Alignment:
Q  317 aaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    ||||||||||||| | |||||| ||||||||||||| |||||||||||||| || |||| ||||||||    
T  30215506 aaatgttactacacagttacttcattaaaaccctcattattactcatacactattattcaattaatta 30215573  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 30215931 - 30215868
Alignment:
Q  317 aaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctatta 380  Q
    |||| |||||||| |||||||| |||||||| |||| ||||||||||| ||||| |||||||||    
T  30215931 aaattttactacacaattacttcattaaaactctcattattactcataaaccattattctatta 30215868  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 2276386 - 2276317
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatta 384  Q
    |||||| |||||||| | || ||| ||| ||| || || ||||||||||||||||| |||||||||||||    
T  2276386 taaaatattactacacagttgcttcatttaaaaccgcactattactcatacaccattattctattaatta 2276317  T

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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 22599 - 22652
Alignment:
Q  316 aaaatgttactacaaaattactttattaaaaccctcaatattactcatacacca 369  Q
    |||||||||||||| |||||||| ||||||||||||| | ||||||||||||||    
T  22599 aaaatgttactacacaattacttcattaaaaccctcactgttactcatacacca 22652  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 381
Target Start/End: Complemental strand, 19536466 - 19536406
Alignment:
Q  321 gttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaa 381  Q
    ||||||||| ||||| || ||||||||||| ||||||||||||||||||  ||||||||||    
T  19536466 gttactacacaattatttcattaaaaccctaaatattactcatacaccactattctattaa 19536406  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 15849902 - 15849837
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctatta 380  Q
    ||||||||||||||| ||||||   |||||||| |||| ||||||||||||||||  |||||||||    
T  15849902 taaaatgttactacacaattacaccattaaaactctcactattactcatacaccactattctatta 15849837  T

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Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 6789 - 6722
Alignment:
Q  322 ttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaattatccta 389  Q
    |||||||| |||||||| ||| ||||||||| ||||||||||||||||| | | ||||||||| ||||    
T  6789 ttactacacaattacttcatttaaaccctcactattactcatacaccattaatatattaattacccta 6722  T

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Target: scaffold0128 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 14157 - 14119
Alignment:
Q  310 ctcattaaaatgttactacaaaattactttattaaaacc 348  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  14157 ctcattaaaatgttactacaaaattacttcattaaaacc 14119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 10140 - 10069
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaattatcc 387  Q
    |||||| | |||||| || ||||| |||||||||  || |||| |||||||||||| ||||||||||||||||    
T  10140 taaaatatcactacacaactacttcattaaaacctccactatt-ctcatacaccattattctattaattatcc 10069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 12907 - 12839
Alignment:
Q  315 taaaatgttactacaaaattactttattaaaaccctcaatattactcatacaccatcattctattaatt 383  Q
    |||||| |||||||| ||||  || ||| ||||||||| |||| |||||||||||  ||||||||||||    
T  12907 taaaatattactacacaattgtttcatttaaaccctcattattgctcatacaccactattctattaatt 12839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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