View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0889_low_1 (Length: 784)
Name: NF0889_low_1
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0889_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 9e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 453 - 689
Target Start/End: Complemental strand, 40488453 - 40488212
Alignment:
| Q |
453 |
cttagaaaaattatctaaacaaagatagttcgcaaaatatacttttttcaccggtatccaaaatcttcttcctctttggcgtgctgctctctctcaaaat |
552 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
40488453 |
cttagaaaaattatctaaacaaagatagtttgccaaatatacttttttcaccggtatccaaaatcttcttcctctgtggcgtgttgctctctctcaaaat |
40488354 |
T |
|
| Q |
553 |
tatcttactgtgcgcctcaatttttgctcacgcaccaat------actagggattatgattcctgtttatatcacttaacacacacatgggttaccaacc |
646 |
Q |
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|||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40488353 |
tatcttactgtgcgccacaattttt-ctcacgcaccaatactgcaactagggattatgattcccttttatatcacttaacacacacatgggttaccaacc |
40488255 |
T |
|
| Q |
647 |
catttaccaatacacacgtagcacaagagcccattcacaaaag |
689 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40488254 |
catttaccaatacacacgtagcacaagagcccattcataaaag |
40488212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 40489460 - 40489184
Alignment:
| Q |
22 |
catcatcatatatcaatcaaatcatgtgcataaataatatagttaaaaataaggaaatttgtcttgggatcagagtgtgcaatacggaataagcgaaagc |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40489460 |
catcatcatatatcaatcaaatcatgtgcataaataacatagttaaaaataaggaaatttgtcttgggatcagagtgtgcaatacggaataagcggaagc |
40489361 |
T |
|
| Q |
122 |
ttaggttatctctttttgtgaaacctgaacaatcaaattaatcctgcnnnnnnnnnnnnnnnnnnnntgagtaaaagtcataaatgagaacacaggaaat |
221 |
Q |
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|| | ||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||||||||||||| ||| |
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| T |
40489360 |
ttggattatctctttttgtgaaacttgaacaatcaaattaatcccgcacaaccaacaacaacaacaatgagtaaaagccataaatgagaacacagggaat |
40489261 |
T |
|
| Q |
222 |
ttatcgtggaaaactcctctcaatatgagaaaataaaaaccattgggcctagttttaccaaaaacttccactatcac |
298 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
40489260 |
ttatcgtggaaaactcctctcaatatgagaaaataaaaaccattggacctagttttgccaaaaacttccactatcac |
40489184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 307 - 501
Target Start/End: Complemental strand, 40488646 - 40488453
Alignment:
| Q |
307 |
taatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaacgggtgagcaaacccta |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
40488646 |
taatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaacaaatatgatgattataacaaccggtgagcaaacccta |
40488547 |
T |
|
| Q |
407 |
aataaatatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaaacaaagatagttcgcaaaatatacttttttc |
501 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
40488546 |
aa-aagtatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaaacaaagatagtttgccaaatatacttttttc |
40488453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 703 - 784
Target Start/End: Complemental strand, 40488155 - 40488074
Alignment:
| Q |
703 |
cttagataagtgtgtggccctcgcttgaggagggatccacccaacaaattatcgacatgcatatatgcaaccacccaataca |
784 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
40488155 |
cttagataagtgtttggccctcgcttgaggagggatccacccaacaaattatcgacacgcatacatgcaaccacccaataca |
40488074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 309 - 470
Target Start/End: Original strand, 36966793 - 36966942
Alignment:
| Q |
309 |
atggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaacgggtgagcaaaccctaaa |
408 |
Q |
| |
|
||||||||||| |||||||| ||||||| || |||| ||||||||||| ||| |||| || |||||||||||||||||| | ||||||||||| |
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| T |
36966793 |
atggttacgattaatgtcttcttaaatctctaggaac--cgacaatcatcaaataatcaccaactatgatgattctaacaacc----aacaaaccctaaa |
36966886 |
T |
|
| Q |
409 |
taaatatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaa |
470 |
Q |
| |
|
|| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36966887 |
tagatatcccaaacagacacaaag------agaagacaaaactacttagaaaaattatctaa |
36966942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 2764675 - 2764804
Alignment:
| Q |
305 |
aataatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaacgggtgagcaaaccc |
404 |
Q |
| |
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|||||||||||| ||||| ||||| |||||||| || |||| ||||| ||||| ||| |||| || |||| ||||||||||||| | |||||||| | |
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| T |
2764675 |
aataatggttacaatcaacgtcttcctaaatctctaggaac--cgacagtcatcaaataatcaccaattatggtgattctaacaaccagagagcaaactc |
2764772 |
T |
|
| Q |
405 |
taaataaatatccaaaacagacacaaagagaa |
436 |
Q |
| |
|
|||||| ||| | |||||||||||||||||| |
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|
| T |
2764773 |
taaataggtataccaaacagacacaaagagaa |
2764804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 230 - 390
Target Start/End: Complemental strand, 55280479 - 55280327
Alignment:
| Q |
230 |
gaaaactcctctcaatatgagaaaataaaaaccattgggcctagttttaccaaaaacttccactatcacaatgtcaataatggttacgatcaatgtcttt |
329 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| | |||||| |||||||||||||||| |||||| ||||||||| ||||||||||| |
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|
| T |
55280479 |
gaaaactcctctcaatgtgagagaataaaaaccatgagacctagtccagccaaaaacttccactaccacaat------aatggttacaatcaatgtcttc |
55280386 |
T |
|
| Q |
330 |
ctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaac |
390 |
Q |
| |
|
||||||| || ||||| |||||||||| ||| |||| || |||| ||||||||||||| |
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|
| T |
55280385 |
ataaatctctaggaact--gacaatcatcaaataatcaccaactatggtgattctaacaac |
55280327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 307 - 470
Target Start/End: Original strand, 17920599 - 17920755
Alignment:
| Q |
307 |
taatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaa-tatgatgattctaacaacgggtgagcaaaccct |
405 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| || ||||| ||||||||| ||| |||| || |||||||||||||||||| | |||||||| || |
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|
| T |
17920599 |
taatggttacaatcaatgtcttcataaatctctaggaacta--acaatcatcaaataatcatccaactatgatgattctaacaactagagagcaaactct |
17920696 |
T |
|
| Q |
406 |
aaataaatatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaa |
470 |
Q |
| |
|
||||| |||||| ||||| |||| ||| | |||||||||||||||||||||||||||||| |
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|
| T |
17920697 |
aaatagatatcccaaacaaacac------aaacaaaagacaaaactacttagaaaaattatctaa |
17920755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 279 - 423
Target Start/End: Complemental strand, 35905771 - 35905635
Alignment:
| Q |
279 |
ccaaaaacttccactatcacaatgtcaataatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgat |
378 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| || ||||| | ||||||| ||| |||| || |||| | |
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|
| T |
35905771 |
ccaaaaacttccactatcacaat------aatggttacaatcaatgtcttcctaaatctctagaaactg--aaaatcatcaaataatcaccaactatggt |
35905680 |
T |
|
| Q |
379 |
gattctaacaacgggtgagcaaaccctaaataaatatccaaaaca |
423 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||||| ||||| |
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|
| T |
35905679 |
gattctaacaaccagagagcaaaccctaaatagatatcccaaaca |
35905635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 35905931 - 35905856
Alignment:
| Q |
85 |
ttgggatcagagtgtgcaatacggaataagcgaaagcttaggttatctctttttgtgaaacctgaacaatcaaatt |
160 |
Q |
| |
|
|||| ||||||||| ||| ||||||| ||| ||||||| ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
35905931 |
ttggaatcagagtgcgcagagcggaatatgcggaagcttaaattatctctttttgtggaacctgaacaatccaatt |
35905856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 2281622 - 2281547
Alignment:
| Q |
85 |
ttgggatcagagtgtgcaatacggaataagcgaaagcttaggttatctctttttgtgaaacctgaacaatcaaatt |
160 |
Q |
| |
|
|||||||||| ||| |||| ||||||| ||| ||||||| ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
2281622 |
ttgggatcagtgtgcgcaaaacggaatctgcggaagcttaaattatctctttttgtggaacctgaacaatccaatt |
2281547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 14261452 - 14261488
Alignment:
| Q |
435 |
aaagagaagacaaaactacttagaaaaattatctaaa |
471 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
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|
| T |
14261452 |
aaagagaagacaaaactacttagataaattatctaaa |
14261488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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