View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0889_low_15 (Length: 271)
Name: NF0889_low_15
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0889_low_15 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 271
Target Start/End: Complemental strand, 47918005 - 47917782
Alignment:
| Q |
48 |
agactttcctgtaggattgttaggacttggtgactcaaacttttccttcagaacattaaggtctgcagaacgatttaccgggcatagcttgggaagttga |
147 |
Q |
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| T |
47918005 |
agactttcctgtaggattgttaggacttggtgactcaaacttttccttcagaacattaaggtctgcagaatgatttaccgggcatagcttgggaagttga |
47917906 |
T |
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| Q |
148 |
tcaagaagccaagagaaagcaaaccatgattcacaaactatagacattccccataaccagactgcatcagtatttttgtgtgtgaccctccaacgcagga |
247 |
Q |
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| T |
47917905 |
tcaagaagccaagagaaagcaaaccatgattcacaaactatagacattccccataaccagactgcatcagtatttttgtgtgtgaccctccaacgcagga |
47917806 |
T |
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| Q |
248 |
acagtacaagggcaaccagacgaa |
271 |
Q |
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| T |
47917805 |
acagtacaagggcaaccagacgaa |
47917782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 29919230 - 29919447
Alignment:
| Q |
48 |
agactttcctgtaggattgttaggacttggtgactcaaacttttccttcagaacattaaggtctgcagaacgatttaccgggcatagcttgggaagttga |
147 |
Q |
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| T |
29919230 |
agactttcctgtaggattgttaggacttggtgattcaaatttttccttcagaacattaagatctgtagaacgatttactgggcatagcttgggcagttga |
29919329 |
T |
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| Q |
148 |
tcaagaagccaagagaaagcaaaccatgattcacaaactatagacattccccataaccagactgcatcagtatttttgtgtgtgaccctccaacgcagga |
247 |
Q |
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| T |
29919330 |
tcaagaagccaagagaaagcaaaccataattcacaaactatagacatgccccataaccagactgcatcggtatttttgtgtgtgaccctccagtgcagga |
29919429 |
T |
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| Q |
248 |
acagtacaagggcaacca |
265 |
Q |
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| T |
29919430 |
acaacacaagagcaacca |
29919447 |
T |
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Back To:
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Target: scaffold0019 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 257
Target Start/End: Original strand, 53527 - 53722
Alignment:
| Q |
62 |
gattgttaggacttggtgactcaaacttttccttcagaacattaaggtctgcagaacgatttaccgggcatagcttgggaagttgatcaagaagccaaga |
161 |
Q |
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| T |
53527 |
gattgtcaggatttggtgtttcaaatttttccttcagaatatttagatcggcaaaatgatttactggacatagcttggtaacttgatcaagaagccaaga |
53626 |
T |
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| Q |
162 |
gaaagcaaaccatgattcacaaactatagacattccccataaccagactgcatcagtatttttgtgtgtgaccctccaacgcaggaacagtacaag |
257 |
Q |
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| T |
53627 |
gaaagcaaaccatatttcacaaacaacagacatgctccattaccagattgcatcggtatttttgtgtgtgaccctccaatgcaagaacagtgcaag |
53722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 53368 - 53203
Alignment:
| Q |
88 |
ttttccttcagaacattaaggtctgcagaacgatttaccgggcatagcttgggaagttgatcaagaagccaagagaaagcaaaccatgattcaca---aa |
184 |
Q |
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||||||||||||||||| || || | | || ||||||| || |||||||||| || |||||||||||||||||||||||||||| || |||||| || |
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| T |
53368 |
ttttccttcagaacatttagatcggaaaaatgatttactggacatagcttggtaacttgatcaagaagccaagagaaagcaaactatatttcacaaacaa |
53269 |
T |
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| Q |
185 |
ctatagacattccccataaccagactgcatcagtatttttgtgtgtgaccctccaacgcaggaacagt |
252 |
Q |
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| T |
53268 |
caacagacatgcttcataaccagattgcattggtatttt--tgtgtgaccctccaatgcaagaacagt |
53203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 15419842 - 15419911
Alignment:
| Q |
147 |
atcaagaagccaagagaaagcaaaccatgattcacaaactatagacattccccataaccagactgcatca |
216 |
Q |
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| T |
15419842 |
atcaagaagccatgagaaagcaaaccaaatttcacaaacaattgatatcccccataaccacagtgcatca |
15419911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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