View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0889_low_20 (Length: 245)
Name: NF0889_low_20
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0889_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 16978207 - 16978043
Alignment:
| Q |
1 |
caaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaa |
100 |
Q |
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| T |
16978207 |
caaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaa |
16978108 |
T |
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| Q |
101 |
atcaagatttgggaacagattcagcgggaatgttgttagagagttgcagctactgatgatgtcca |
165 |
Q |
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| T |
16978107 |
atcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
16978043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17030079 - 17029915
Alignment:
| Q |
1 |
caaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaa |
100 |
Q |
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| T |
17030079 |
caaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaa |
17029980 |
T |
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| Q |
101 |
atcaagatttgggaacagattcagcgggaatgttgttagagagttgcagctactgatgatgtcca |
165 |
Q |
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| T |
17029979 |
atcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
17029915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 17048417 - 17048253
Alignment:
| Q |
1 |
caaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaa |
100 |
Q |
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| T |
17048417 |
caaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaa |
17048318 |
T |
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| Q |
101 |
atcaagatttgggaacagattcagcgggaatgttgttagagagttgcagctactgatgatgtcca |
165 |
Q |
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| T |
17048317 |
atcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtcca |
17048253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 17109539 - 17109396
Alignment:
| Q |
1 |
caaatttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaa |
100 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||| || ||| |
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| T |
17109539 |
caaatttaggacactcttcaattaagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaacatcaagagt |
17109440 |
T |
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| Q |
101 |
atcaagatttgggaacagattcagcgggaatgttgttagagagt |
144 |
Q |
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| T |
17109439 |
gtcaagattcgggaacagtttgagagggaaggtcgttagagagt |
17109396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 17024395 - 17024305
Alignment:
| Q |
20 |
aattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagattt |
110 |
Q |
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| T |
17024395 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaacgccgagataatcaagattt |
17024305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 17089667 - 17089577
Alignment:
| Q |
20 |
aattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaagattt |
110 |
Q |
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| T |
17089667 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaacgccgagataatcaagattt |
17089577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 17035157 - 17035072
Alignment:
| Q |
20 |
aattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaaggtcgagaaaatcaa |
105 |
Q |
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| T |
17035157 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaacgccgagataatcaa |
17035072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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