View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0889_low_21 (Length: 238)

Name: NF0889_low_21
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0889_low_21
NF0889_low_21
[»] chr7 (8 HSPs)
chr7 (89-216)||(17364747-17364878)
chr7 (89-216)||(43941734-43941865)
chr7 (89-216)||(41678921-41679049)
chr7 (5-82)||(41678368-41678445)
chr7 (1-82)||(17364193-17364274)
chr7 (1-82)||(43942339-43942420)
chr7 (1-82)||(25806566-25806647)
chr7 (1-68)||(22708135-22708202)
[»] chr1 (5 HSPs)
chr1 (89-216)||(27301865-27301996)
chr1 (89-216)||(20572432-20572563)
chr1 (14-82)||(20569844-20569912)
chr1 (1-82)||(26473945-26474026)
chr1 (14-82)||(27301375-27301442)
[»] chr6 (5 HSPs)
chr6 (89-216)||(24498223-24498354)
chr6 (1-82)||(24497712-24497793)
chr6 (89-153)||(12285710-12285775)
chr6 (89-153)||(12314066-12314131)
chr6 (1-71)||(12313479-12313549)
[»] chr5 (13 HSPs)
chr5 (89-216)||(26700710-26700841)
chr5 (89-216)||(26970443-26970574)
chr5 (89-216)||(25073101-25073234)
chr5 (89-216)||(25131072-25131205)
chr5 (89-216)||(19545481-19545610)
chr5 (89-216)||(40690245-40690376)
chr5 (1-80)||(26701316-26701395)
chr5 (1-80)||(26971049-26971128)
chr5 (1-82)||(25073705-25073786)
chr5 (1-82)||(25131676-25131757)
chr5 (1-82)||(19546132-19546213)
chr5 (1-82)||(40690859-40690940)
chr5 (1-82)||(41309974-41310055)
[»] chr8 (4 HSPs)
chr8 (89-216)||(5660283-5660414)
chr8 (89-216)||(18559363-18559494)
chr8 (1-83)||(5660841-5660923)
chr8 (1-79)||(18558816-18558894)
[»] chr2 (2 HSPs)
chr2 (89-216)||(26223109-26223238)
chr2 (1-78)||(26223743-26223820)
[»] chr3 (1 HSPs)
chr3 (89-216)||(16367849-16367981)
[»] scaffold0074 (1 HSPs)
scaffold0074 (14-68)||(20465-20519)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 17364747 - 17364878
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| | ||    
T  17364747 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactctc 17364846  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||||||||||||||||||||||    
T  17364847 atgctccacgtgcgttgctttcatctgatgat 17364878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 43941865 - 43941734
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| | ||    
T  43941865 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactctc 43941766  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    |||||| |||||||||||||||||||||||||    
T  43941765 atgctcgacgtgcgttgctttcatctgatgat 43941734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 41678921 - 41679049
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    ||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||||||    ||||||| |||||||||||||||||| | ||    
T  41678921 ttacacaaaccattgccaccatctttagctattatcaaaataa---gtttcaaaacataaaaatgactagacaactaatgtcactaaaattaggactctc 41679017  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    |||||| |||||||||||||||||||||||||    
T  41679018 atgctctacgtgcgttgctttcatctgatgat 41679049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 41678368 - 41678445
Alignment:
Q  5 cacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||  ||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  41678368 cacaattctggcgttttaaaaactaccgaaattttgcctgccacaatgtttaaagcggcagtttttacgtagccgcca 41678445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 17364193 - 17364274
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||| ||||||  ||||||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||| ||||||    
T  17364193 tatgtacaattctggcgttttaaaaactgccgaaattttgcctaccacaatgtttaaagcggcagtttttacgtaaccgcca 17364274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 43942420 - 43942339
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  ||||||||||||||||| || |||||  ||||||||| |||||||| ||||||||||||||||||||||    
T  43942420 tatgcacaattctggcgttttaaaaactgccgatattttgcctgccacaaggtttaaagtggcagtttttacgtagccgcca 43942339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25806566 - 25806647
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  || ||||| | ||||| ||||||||| |||||||||| ||||  ||||| |||||||| ||||||||||    
T  25806566 tatgcacaattctggtgtttttataactgtggaaattttgtctgccacaacgtttgcagcggtagtttttaggtagccgcca 25806647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22708135 - 22708202
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagttt 68  Q
    |||||||||||  |||| ||| |||||||| | |||||| |||||||||| |||||||||||| ||||    
T  22708135 tatgcacaattctggcggtttcaaaactgccggaattttgtctgccacaaagtttaaagcggcggttt 22708202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 27301865 - 27301996
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| | ||    
T  27301865 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactctc 27301964  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||||||||||||||||||||||    
T  27301965 atgctccacgtgcgttgctttcatctgatgat 27301996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 20572432 - 20572563
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| | ||    
T  20572432 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactctc 20572531  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    |||||| |||||| ||||||||||||||||||    
T  20572532 atgctcgacgtgcattgctttcatctgatgat 20572563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 20569844 - 20569912
Alignment:
Q  14 ggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    ||||||||||||| ||| ||||||||  ||||||||||||||||||||||| |||||||||||||||||    
T  20569844 ggcgttttaaaaattgccgaaattttgcctgccacaatgtttaaagcggcattttttacgtagccgcca 20569912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26474026 - 26473945
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  ||||||||||||||||| || |||||  |||| |||| |||||||| ||||||||||||||||||||||    
T  26474026 tatgcacaattctggcgttttaaaaactgccgatattttgcctgctacaaggtttaaagtggcagtttttacgtagccgcca 26473945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 27301375 - 27301442
Alignment:
Q  14 ggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||| |||| ||||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  27301375 ggcgttttaaaa-ctgccgaaattttgcctgccacaatgtttaaagcagcagtttttacgtagccgcca 27301442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 24498223 - 24498354
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| ||||||||||| | ||    
T  24498223 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcaataaaattaggactctc 24498322  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||||||||||||||||||||||    
T  24498323 atgctccacgtgcgttgctttcatctgatgat 24498354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 24497712 - 24497793
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  ||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24497712 tatgcacaattctggcgttttaaaaactgccgaaattttgcctgccacaatgtttaaagcggcagtttttacgtagccgcca 24497793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 12285710 - 12285775
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctc-aaaataacaagtttcaaaacataaaaatg 153  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  12285710 ttacacaaaccattgccaccatctttagcaattctcaaaaataacaagtttcaaaacataaaaatg 12285775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 12314066 - 12314131
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaa-taacaagtttcaaaacataaaaatg 153  Q
    |||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||    
T  12314066 ttacacaaaccattgccaccatctttcgcaattcttaaaaataacaagtttcaaaacataaaaatg 12314131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12313479 - 12313549
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagttttta 71  Q
    |||||||||||| ||||||| ||||| ||| |||||||| ||| |||||| ||||||| ||| ||||||||    
T  12313479 tatgcacaattttggcgtttcaaaaattgccgaaattttgtctaccacaaagtttaaatcggtagttttta 12313549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 26700841 - 26700710
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| | ||    
T  26700841 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactctc 26700742  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||| ||||||||||||||||||||||    
T  26700741 atgctccacttgcgttgctttcatctgatgat 26700710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 26970574 - 26970443
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| | ||    
T  26970574 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactctc 26970475  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||| ||||||||||||||||||||||    
T  26970474 atgctccacttgcgttgctttcatctgatgat 26970443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 25073234 - 25073101
Alignment:
Q  89 ttacacaaaccattgccaccatcttt--agctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattg 182  Q
    ||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |     
T  25073234 ttacataaaccattgccaccatctttttagcaattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactc 25073135  T
Q  183 tcatgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||||||||||||||||||||||||    
T  25073134 tcatgctccacgtgcgttgctttcatctgatgat 25073101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 25131205 - 25131072
Alignment:
Q  89 ttacacaaaccattgccaccatcttt--agctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattg 182  Q
    ||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |     
T  25131205 ttacataaaccattgccaccatctttttagcaattctcaaaataacaagtttcaaaacataaaaatgactagacaactgatgtcactaaaattaggactc 25131106  T
Q  183 tcatgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||||||||||||||||||||||||    
T  25131105 tcatgctccacgtgcgttgctttcatctgatgat 25131072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 19545610 - 19545481
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg--gacaactgatgtcactaaaattaggattgtcat 186  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| | ||||    
T  19545610 ttacaaaaaccatttccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgaccacaactgatgtcactaaaattaggactctcat 19545511  T
Q  187 gctccacgtgcgttgctttcatctgatgat 216  Q
    |||| || ||| ||||||||||||||||||    
T  19545510 gctcaacatgcattgctttcatctgatgat 19545481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 40690376 - 40690245
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     |||| |||||||||||||||||||  | ||    
T  40690376 ttacacaaaccatttccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactacacaaatgatgtcactaaaattagggctctc 40690277  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||| ||| ||||||||||||||||||    
T  40690276 atgctccacatgcattgctttcatctgatgat 40690245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26701395 - 26701316
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgc 80  Q
    |||||||||||  ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26701395 tatgcacaattctggcgttttaaaaactgccgaaattttgtctgccacaatgttaaaagcggcagtttttacgtagccgc 26701316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26971128 - 26971049
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgc 80  Q
    |||||||||||  ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26971128 tatgcacaattctggcgttttaaaaactgccgaaattttgtctgccacaatgttaaaagcggcagtttttacgtagccgc 26971049  T

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Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 25073786 - 25073705
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  ||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  25073786 tatgcacaattctggcgttttaaaaactgccgaaattttgcctgccacaatgtttaaagcggcagtttttacgaagccgcca 25073705  T

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Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 25131757 - 25131676
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  ||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  25131757 tatgcacaattctggcgttttaaaaactgccgaaattttgcctgccacaatgtttaaagcggcagtttttacgaagccgcca 25131676  T

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Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19546213 - 19546132
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  ||||||| ||||||||| |||||||   ||| |||||||||||||||||||||||||||||||||||||    
T  19546213 tatgcacaattctggcgtttcaaaaactgccgaaatttcgcctggcacaatgtttaaagcggcagtttttacgtagccgcca 19546132  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40690940 - 40690859
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  ||||||||||||||||| |||||||   ||||||||||||||||||| | | |||||||||||||||||    
T  40690940 tatgcacaattctggcgttttaaaaactgccgaaatttcgcctgccacaatgtttaaagcaggaatttttacgtagccgcca 40690859  T

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Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 41310055 - 41309974
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgcca 82  Q
    |||||||||||  | ||||| || |||||| |||||||   |||||||||||||||||||||||||||||||||||||||||    
T  41310055 tatgcacaattctgccgtttcaagaactgccgaaatttcgcctgccacaatgtttaaagcggcagtttttacgtagccgcca 41309974  T

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Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 5660414 - 5660283
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||| | ||    
T  5660414 ttacgcaaaccatcgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgactagacaacttatgtcactaaaattaggactctc 5660315  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||||||||||||||||||||||    
T  5660314 atgctccacgtgcgttgctttcatctgatgat 5660283  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 18559363 - 18559494
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg----gacaactgatgtcactaaaattaggattgtc 184  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     |||||| |||||||||||||||||| | ||    
T  18559363 ttacacaaaccattgccactatctttagctattctcaaaataacaagtttcaaaacataaaaatgactacacaactcatgtcactaaaattaggactctc 18559462  T
Q  185 atgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||| ||| ||||||||||||||    
T  18559463 atgctccacgtgcattgttttcatctgatgat 18559494  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5660923 - 5660841
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccgccac 83  Q
    |||| ||||||| ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  5660923 tatgtacaatttaggcgttttaaaaactgccgaaattttgcctgccacaatgtttaaagcggcagtttttacgtagccgccac 5660841  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 18558816 - 18558894
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagccg 79  Q
    |||||| ||||  ||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||| |||||||    
T  18558816 tatgcataattctggcgttttaaaaactgccgaaattttgcctgccacaatgtttaaaacggcagtttttatgtagccg 18558894  T

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Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 26223238 - 26223109
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatg--gacaactgatgtcactaaaattaggattgtcat 186  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||| | ||||    
T  26223238 ttacacaaaccatttccaccatctttagctattctcaaaataacaagtttcaaaacataaaaatgaccacaactgatgtcactaaaatttggactctcat 26223139  T
Q  187 gctccacgtgcgttgctttcatctgatgat 216  Q
    |||| || ||| ||||||||||||||||||    
T  26223138 gctcaacatgcattgctttcatctgatgat 26223109  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26223820 - 26223743
Alignment:
Q  1 tatgcacaatttgggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagtttttacgtagcc 78  Q
    |||||||||||  | ||||| || |||||| |||||||   |||||||||||||||||||||||||||||||||||||    
T  26223820 tatgcacaattctgacgtttcaagaactgccgaaatttcgcctgccacaatgtttaaagcggcagtttttacgtagcc 26223743  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 89 - 216
Target Start/End: Original strand, 16367849 - 16367981
Alignment:
Q  89 ttacacaaaccattgccaccatctttagctattct-caaaataacaagttt-caaaacataaaaatgg----acaactgatgtcactaaaattaggattg 182  Q
    |||||||||||||| |||| ||||||||||||||  ||||||||||||||| |||||||||||||||     |||| ||||||||||||||| |||| |     
T  16367849 ttacacaaaccatttccac-atctttagctattcgacaaaataacaagtttacaaaacataaaaatgactacacaaatgatgtcactaaaatgaggactc 16367947  T
Q  183 tcatgctccacgtgcgttgctttcatctgatgat 216  Q
    ||||||||||||||| ||||| ||||||||||||    
T  16367948 tcatgctccacgtgcattgctgtcatctgatgat 16367981  T

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Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 20519 - 20465
Alignment:
Q  14 ggcgttttaaaaactgcggaaattttatctgccacaatgtttaaagcggcagttt 68  Q
    |||| ||| |||||||| |||||||| |||||||||| |||||||||||| ||||    
T  20519 ggcggtttcaaaactgccgaaattttgtctgccacaaagtttaaagcggcggttt 20465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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