View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0889_low_22 (Length: 228)
Name: NF0889_low_22
Description: NF0889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0889_low_22 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47917128 - 47917355
Alignment:
| Q |
1 |
tggttttggtaatgcaatgtggccaaaggaaggggacttgggaaatggaaaagatggtcatgtttctgagccaagtgaattgatgagccgacaatagagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47917128 |
tggttttggtaatgcaatgtggccaaaggaaggggatttgggaaatggaaaagatggtcatgtttctgagccaagtgaattgatgagccgacaatggagg |
47917227 |
T |
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| Q |
101 |
ccactaacaaggaagattacgatacctgctgctgttctaagcccatatcggtaccaagcctcgcttcttttatttttcaataaataatgtannnnnnnaa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47917228 |
ccactaacaaggaagattaagatacctgctgctgttctaagcccatatcggtaccaagcctcgcttcttttatttttcaataaataatgtatttttttaa |
47917327 |
T |
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| Q |
201 |
taatcatgaattcatttttatgtttctt |
228 |
Q |
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||||||| ||| |||||||||||||||| |
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| T |
47917328 |
taatcataaatgcatttttatgtttctt |
47917355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 29920146 - 29919985
Alignment:
| Q |
1 |
tggttttggtaatgcaatgtggccaaaggaaggggacttgggaaatggaaaagatggtcatgtttctgagccaagtgaattgatgagccgacaatagagg |
100 |
Q |
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||||| |||||||||||| |||||||||||||| || || ||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |||| |
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| T |
29920146 |
tggttatggtaatgcaatatggccaaaggaaggagatttcggaaatggaaaagatggcgatgtttctgagccaactgaattgatgagccgaccatggagg |
29920047 |
T |
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| Q |
101 |
ccactaacaaggaagattacgatacctgctgctgttctaagcccatatcggtaccaagcctc |
162 |
Q |
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| T |
29920046 |
ccactaacaaggaagttgaagatacctgctgctgttctcagcccatatcggtaccaagcctc |
29919985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 53965 - 53929
Alignment:
| Q |
121 |
gatacctgctgctgttctaagcccatatcggtaccaa |
157 |
Q |
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||||||| |||||||||| |||||||||||||||||| |
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| T |
53965 |
gataccttctgctgttctcagcccatatcggtaccaa |
53929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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